Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02489 ATGGGCACTACTACGTCAATGTGCATGTGCATGTTTTTATTGTTATCTGCTACTTTCTTGCTTGGGTGGGATTGGGTAGGTGCCTATGGGCAAGAGGTGGTGGCCCGATCTGAAAGAGAAGCATTGGAAATTATCATAGGAGGTGGCGGTGGTGGTGAGGCCCCTGCTCCTTCCCCAGATGAATGTCCCCCACCACCTCCCCCACCGGAGTGTCCCCCACCCATTTCCCCGCCGCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCACCACCTCCATCGCCGTCTCCACCTCCACCTCCATCTCCATCGCCACCTCCACCACCTCGACCTCCATCACCACCTCCACCTCGACCTCCATCGCCACCTCCACCATCTCCCCCACCACCTCGACCTCCATCACCACCACCTCCATCGCCGTCTCCACCTCCACCTCGACCTCGACCTCCACCGCGAACCATGAACCGGTTGCAGAGAGCTCGTAAAGTGCTTCTAAAATTCGCACTTAATATCTCTGACCCAACTGGATACACGAAAAACTGGAAGGAAAGGACAAGAAACACTTGTGATTTCAATGGGGTCCTATGTGCCAAATATCCTCACACAAGTGAGATAGCAGTGGCGGGACTGGACCTGAATGGAGCCAAGATCAGTGGGCGCAACGGTAAAGATCTGAGCCTCTCGGGTATCTTGAACACTATACCAGAGTTGATATTCTTCCACGTCAACTCCAACAGCTTCACAGGTGGCGTCCCAAAGGAAATCATCCACTACCCATATTTCTTCGAGTTAGACCTCAGTAACAACAAATTGGTGGGCGAGTTTCCAAAGCAAGTGCTTCAGTCCAAGCTACTGGTGTTCTTAGACCTCAGGTTCAACCATCTCTATGGTCCCATTCCACCAGAACTGTTTCGGTTGGATCTGGACGTGATTTTCATCAACAACAATCACTTCACGGGTCATCTCCCCGATAACTTTGGGTCCACACCGGCCAGGTACCTCACTTTTGCAAACAACCAACTCACGGGTCCAATCCCCAGAAGCATTGGCAAAGCTTACAAAACCCTCACCGAAGTGCTCTTCTTGGGCAACCACTTGGAGGGGTGCTTGCCCTTCGAAATCGGGTACCTAAAAAAGGCCACAGTCTTTGATGTCAGCAAAAACTGCTTAACCGGTCCCATCCCACACTCCTTTGCCTGCTTGAAAAGCATTCGGTACCTGAATTTGGAGCACAACCAGTTTTACGGAACTGTTCCCGAGATGGTTTGTCAGCTGCCAGGGCTCCGCAACAATGGCAACCTCTCCTTAGCGAACAACTATTTCACCCAGGTGGGTCCTGCATGCATGAAGCTCATCAAGCACAAAGTGCTCGACGTCACCAACAATTGCATCCTCGGTCTTCCAAAACAAAGATCACCCCGACATTGCTCTCATTTTTTCTCCAAGATGAAGCAATGCCCAAATCCTAAGTATCTCAATTACATCCCTTGTAAGGGAAAGGGATACCACTTGTCGATTCAGACAACCGCCGCGACCCCTGCGCCCCTGACTTACAACTCTCTCAAACCTCATCGCATGTGA 1593 0.5185 MGTTTSMCMCMFLLLSATFLLGWDWVGAYGQEVVARSEREALEIIIGGGGGGEAPAPSPDECPPPPPPPECPPPISPPPPPPPPPPPPPPPPPPPPPSPSPPPPPSPSPPPPPRPPSPPPPRPPSPPPPSPPPPRPPSPPPPSPSPPPPRPRPPPRTMNRLQRARKVLLKFALNISDPTGYTKNWKERTRNTCDFNGVLCAKYPHTSEIAVAGLDLNGAKISGRNGKDLSLSGILNTIPELIFFHVNSNSFTGGVPKEIIHYPYFFELDLSNNKLVGEFPKQVLQSKLLVFLDLRFNHLYGPIPPELFRLDLDVIFINNNHFTGHLPDNFGSTPARYLTFANNQLTGPIPRSIGKAYKTLTEVLFLGNHLEGCLPFEIGYLKKATVFDVSKNCLTGPIPHSFACLKSIRYLNLEHNQFYGTVPEMVCQLPGLRNNGNLSLANNYFTQVGPACMKLIKHKVLDVTNNCILGLPKQRSPRHCSHFFSKMKQCPNPKYLNYIPCKGKGYHLSIQTTAATPAPLTYNSLKPHRM* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02489 530 PRINTS Proline rich extensin signature 76 93 - -
Rops1g02489 530 PRINTS Proline rich extensin signature 53 69 - -
Rops1g02489 530 PRINTS Proline rich extensin signature 95 120 - -
Rops1g02489 530 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 158 513 - -
Rops1g02489 530 MobiDBLite consensus disorder prediction 57 156 - -
Rops1g02489 530 Gene3D Ribonuclease Inhibitor 161 335 IPR032675 -
Rops1g02489 530 MobiDBLite consensus disorder prediction 46 158 - -
Rops1g02489 530 SUPERFAMILY L domain-like 165 470 - -
Rops1g02489 530 Pfam Leucine rich repeat 381 418 IPR001611 GO:0005515
Rops1g02489 530 Gene3D Ribonuclease Inhibitor 336 505 IPR032675 -
Rops1g02489 530 Pfam Leucine rich repeat N-terminal domain 164 200 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02489 Rops-Chr1 48014023 48015803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02489 160 494 Trihelix Transcription Factor Family AT4G33970 41.298 9.99e-77 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02489 - - gmx:100781083 551.977