Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02479 ATGATGATCAAGGAAGATGAAACAAGTGTTACCAAAGCCAAGGAACAACCAAGTGAAGCGATAACCAGAGACACGAACAATAATGGAAGCGAAAATGACAATTCAGAAGAATGGTTGAACCTGAGCTTAGGAGGCACTTTACTCTCAACAGAAGGAGACCTTGATCCACAATCAAGACCAGCTACTAGCAAGGTATTTTCGTGCAACATCTGCTTGAGGAAGTTCTTTAACTCTCAAGCATTAGGAGGTCATCAGAATGCTCACAAAAGGGAAAGAGGTGCTGCCAGAAGAAATCAGTCTCAGAAGATGATGACAATGATGGGCTTATCCATGAATGCTCCCATCCTTCGATCACTGGGTGTCCAACCCCATTCCCTTGTGCACAAGCCATGCAGAGCTAGAACTACAGTAGCAGCTAGCTTTCAAGATGCTTTTGCAGGGCATGAAATGGCATGTACACGCTTCATGCCTGAGGATCAAACAGATCTGGTGTGGCCAGGCAGCTTTCGTTTGGATGCACAACAACCCAAGCCATCACACAAGTCGCTCAACCTTGATTTAGACCTCCGACTCTGA 576 0.4566 MMIKEDETSVTKAKEQPSEAITRDTNNNGSENDNSEEWLNLSLGGTLLSTEGDLDPQSRPATSKVFSCNICLRKFFNSQALGGHQNAHKRERGAARRNQSQKMMTMMGLSMNAPILRSLGVQPHSLVHKPCRARTTVAASFQDAFAGHEMACTRFMPEDQTDLVWPGSFRLDAQQPKPSHKSLNLDLDLRL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02479 191 MobiDBLite consensus disorder prediction 1 37 - -
Rops1g02479 191 MobiDBLite consensus disorder prediction 20 37 - -
Rops1g02479 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Rops1g02479 191 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Rops1g02479 191 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Rops1g02479 191 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 191 - -
Rops1g02479 191 Gene3D Classic Zinc Finger 49 113 - -
Rops1g02479 191 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02479 Rops-Chr1 47851127 47854868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02479 61 170 C2H2 Transcription Factor Family AT1G24625 41.228 4.31e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02479 - - gmx:100306296 224.557