Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02469 ATGAGCTGCAACGGCTGCCGTGTCCTCCGAAAAGGTTGCAGCGATGAGTGCATGCTCAGACATTGCCTACAATGGATAGAGAACCCAGAATCGCAGGGTTATGCCACCCTCTTCGTCGCCAAGTTCTTCGGCCGTGCCACCCTCATGTCTTTCCTTTCCTCCGTGCCCACCAACCAAAGACCCGCTTTGTTTCGGTCACTTCTGTATGAAGCAGTGGGACGCACCGTAAATCCAGTGAACGGGGCGGTGGGGCTGCTGTGGAGTGGGAACTGGCACCTCTGCCAGTTGGGAGTGGACAAAGTTCTCCGAGGTCATGGACCCTTGACTCCACTGCCTCACCGTTCAAGGATGCTCAACAACACTGCTGCTGCTGTTGCTGTGCAAAATTTTCAAGTGCAAGCTGGTTCTCAAGAGAGAGTGGTGGTTGATACTCACCAACACCAACAACCGGCAACACAGTCCCAAGAATCGGACACCACCACCTCAGGAGACGAACAGAAGATCCTTACACTATTCTTCTGA 522 0.5364 MSCNGCRVLRKGCSDECMLRHCLQWIENPESQGYATLFVAKFFGRATLMSFLSSVPTNQRPALFRSLLYEAVGRTVNPVNGAVGLLWSGNWHLCQLGVDKVLRGHGPLTPLPHRSRMLNNTAAAVAVQNFQVQAGSQERVVVDTHQHQQPATQSQESDTTTSGDEQKILTLFF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02469 173 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Rops1g02469 173 MobiDBLite consensus disorder prediction 143 162 - -
Rops1g02469 173 Pfam Lateral organ boundaries (LOB) domain 2 98 IPR004883 -
Rops1g02469 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02469 Rops-Chr1 47769829 47770875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02469 1 113 AS2 family AT3G49940 74.336 7.51e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops1g02469 LOB 9.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02469 - - vun:114190658 218.394