Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02468 ATGACGACGACAACAGTGGTGGCGGGGCGAGAGCTGTCGAACCCTCCGTCGGACGGCATCTCCAACCTCCGTTTCTCCAACCACAGCGATCACCTCCTCGTCTCCTCTTGGGACAAGAGCGTGAGGTTGTACGATGCGAGCGCAAATGTGCTAAGAGGAGAGTTCATGCATGGTGGACCCGTCCTTGACTGTTGCTTCCATGATGATTCTTCCGGCTTCAGTGTCGCCGCCGATAACACTGTCAGACGGCTCCTTTTCAGCTCTAACAAGGAGGATATTTTGGGAAGGCACGATGCACCAGTTCGTTGTGTCGAGTACTCCTATGCAGCAGGGCAGTTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGATCCTAGAGGTGCAAGTGGGCAAGAGCGTACTCTTGTTGGGACATATCCACAACCTGAGCGTGTTTACTCTCTATCTCTTGTTGGACATCGGCTCGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGATTTGAGGAACATGTCGATCCCTGAGCAACGAAGGGAATCTTCATTGAAATATCAAACCAGATGTGTGCGTTGTTACCCAAATGGAACAGGATATGCACTCAGTTCTGTTGAAGGACGGGTTGCAATGGAATTCTTTGACCTTTCTGAAGCTAGCCAAGCAAAGAAGTATGCTTTTAAGTGCCACAGAAAATCAGAAGCTGGAAGAGACATCGTCTACCCTGTAAATGCCATGGCATTCCACCCTATATATGGTACGTTTGCCACTGGAGGTTGTGACGGTTATGTTAATGTATGGGACGGAAACAACAAGAAGAGGCTGTACCAGTATTCAAAATATCCTACTAGCATTGCTGCACTTTCATTTAGCAGAGATGGGCGCCTCCTGGCTGTTGCATCCAGTTATACATTTGAAGAGGGGCCCAAACCCCATGAACCAGATGCTATCTACGTTCGCAGTGTGAACGAGATAGAGGTCAAGCCAAAACCTAAAGTCTATGCCAATCCTTCAGCGTGA 1023 0.4839 MTTTTVVAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSVAADNTVRRLLFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSIPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKPHEPDAIYVRSVNEIEVKPKPKVYANPSA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02468 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Rops1g02468 340 PANTHER MRNA EXPORT FACTOR AND BUB3 9 326 - -
Rops1g02468 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Rops1g02468 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Rops1g02468 340 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Rops1g02468 340 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Rops1g02468 340 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Rops1g02468 340 SMART WD40_4 48 85 IPR001680 GO:0005515
Rops1g02468 340 SMART WD40_4 87 126 IPR001680 GO:0005515
Rops1g02468 340 SMART WD40_4 134 170 IPR001680 GO:0005515
Rops1g02468 340 SMART WD40_4 221 269 IPR001680 GO:0005515
Rops1g02468 340 SMART WD40_4 5 45 IPR001680 GO:0005515
Rops1g02468 340 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
Rops1g02468 340 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Rops1g02468 340 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Rops1g02468 340 Gene3D - 3 334 IPR015943 GO:0005515
Rops1g02468 340 FunFam Mitotic checkpoint protein bub3, putative 5 333 - -
Rops1g02468 340 SUPERFAMILY WD40 repeat-like 16 303 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02468 Rops-Chr1 47752810 47765086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02468 74 302 U-box Gene Family AT2G33340 24.464 7.17e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02468 K02180 - cave:132179947 664.455