Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02467 ATGGAGCCTGCTGAGAAGATTTCTGAAGAATGGAGTTCTCTTGGAGGATTGTACACAGTGGAGGAAGCTGACTTTATGACTCAGTTGCTTGATGGCAGTAATTCTTCTGTTTCTGCCCCAGAAGATGTTGTTCCATCTGCATTTTGGCCTGACCATGAATCCACAGTGATCAATAACAATTCATATTATCCTTCAAAAGTTGCTGACAATGATACTAATTTTTTCTGTTTCTCGCAAGGGAGTAGCTCCAGTACTGAGAGTGGAAATATCTTTCCCACAACAATAAGTAGTGGATCATACTCCTTTGATCCGTTTGGCCCCATGTCCATGGGTTTTTGCTTGGGGCATACCAAATTTAGTCCACATAGCTTTCAAACTAACAAAAAGTCAGGTCTACATCCAGAAAAACCGGTTCTTGCTGACAATTTTCAGGCTGACAGGGAATGTGGAATGCTAGTTTCTGAACCTGCAGCAGAGGATAGAAGCAGCAACCTGGAGAGCCCAGCAAAAAGAGTCAAGAGCTCAACGGAGGTCTCAAAGATTAGGGAGAATGCTAAATCAGAGAAGAATCCAAAATCTGCTTCTGTGAGCAATAACGAAGAGGATAGAAGCGCTGGCCATCAGGGGCAGAGCTCCAGCAGTTGCTTTTCTGAGGATGAATCTAGTGCTTCTCTGGAGCTAAATAGAGCAGCATCTTCAAGCCTGAGCCCGAAAGGTCCACCAACTCTGAATTTAAATTGCAAATCAAAACCCAGCAAGGGTTCTGCTACTGATCCACAGAGCCTCTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATTCTACAAAATCTTGTCCCTAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAACTCCAAATTAAGCTTCTGAGCTCTGACGATCTGTGGATGTATGCTCCCATTGCTTACAATGTAATGAACATTGGACCAGACCTCAATATTTCTCCAAGCAAGCAAACAACCATAGGAAGATCACAGCTTGGCGATTAA 1053 0.4311 MEPAEKISEEWSSLGGLYTVEEADFMTQLLDGSNSSVSAPEDVVPSAFWPDHESTVINNNSYYPSKVADNDTNFFCFSQGSSSSTESGNIFPTTISSGSYSFDPFGPMSMGFCLGHTKFSPHSFQTNKKSGLHPEKPVLADNFQADRECGMLVSEPAAEDRSSNLESPAKRVKSSTEVSKIRENAKSEKNPKSASVSNNEEDRSAGHQGQSSSSCFSEDESSASLELNRAASSSLSPKGPPTLNLNCKSKPSKGSATDPQSLYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNVMNIGPDLNISPSKQTTIGRSQLGD* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02467 350 MobiDBLite consensus disorder prediction 154 264 - -
Rops1g02467 350 MobiDBLite consensus disorder prediction 190 259 - -
Rops1g02467 350 FunFam Basic helix-loop-helix transcription factor 256 313 - -
Rops1g02467 350 Gene3D - 253 312 IPR036638 GO:0046983
Rops1g02467 350 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 91 328 IPR045843 GO:0003700|GO:0006355
Rops1g02467 350 SMART finulus 261 310 IPR011598 GO:0046983
Rops1g02467 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Rops1g02467 350 MobiDBLite consensus disorder prediction 173 189 - -
Rops1g02467 350 Pfam Helix-loop-helix DNA-binding domain 265 305 IPR011598 GO:0046983
Rops1g02467 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 320 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02467 Rops-Chr1 47735226 47736753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02467 10 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 41.143 4.20e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g02467 HLH 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02467 - - gmx:100816788 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02467 1 47735226 47736753 Rops1g02467 1 47735226 47736753 ECH
Rops1g02467 1 47735226 47736753 Rops6g03073 6 53886276 53887441 PCT