Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02466 ATGGAGCCTACTGAGCAGATTTCTGAAGAATGGAGTTCTCTTAGTGGAGTGTACACGGCTGAGGAAGCTGACTTTATGCACCAGTTACTTGGTAACTGCTCAGCCCCAGAACAGCTGCATGAAAATTCAAATTTGGGAACTCAATCTACATTTTGGCATGACCATGAATCCACAATAATTAACCATAACTGTTCATACTTTCGTGTAGAAGTTCCCAATACTAATTTTGCGTGTTCTGTACAAGGGAGTAGCTCAAGTACTACTAGTAGTAATATCTTTCCCACTACAAGTGGTGTTAACCGCACCTCCAATAATCTAGTAACCAATTTTGGCTATATGTCCATGGGTTTTTCCAAACTAAGGCCATATAGCGTGCAAGGGAATGACAACAAATATATAAATGAAAGGAAAGAGATTCTTGCTGGCAAGGAACGTGAAATACTAGTTTCTGAACCAGATGAGGATAAAACCAGAAGCCTGGAAAAATCATCAGGGAAAAGATCTAGGAGCTCAAATGAGAACAAGAGGAATGTTAAATCTAAGAAGAATCCAAGATATGCTTCTAAAAGCACTGAAGAGGAATGCCCTCAGGATCTGACCTTAAGCAGTTGCTGTTCAGATGATGAATCCAATGTTTCTCAGGAGCTACATGGAGGGGATCCTTCAAGTTTGAGCCTGAAGGATTCTACAACTATGAAGTTAAGTAGCAAATCAACATCAAGTAGAGGTCCTGCCACTGATCCAGAGTGTCTATGCAAGACTCTTATGAGGTTTTTCTTTTGCATTGTGCAGAGAAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTACAAAACCTTGTCCCTAATGGAACTAAGGTGGATATCAACACCATGCTTGAGGAAGTTGTCCAATATGTGAAGTTTCTACAACATCAAATTAAGCTTCTAAGCTCTGACGATCTGTGGGTGTATGCTCCCATTGCTTATAATGGAATGAACATTGGGCTGGAACTTAACATCACCTCAACCAAACAACCAAAGAAAATGCATAGCAAAGAGTATGCAGCAGTTTAA 1056 0.3968 MEPTEQISEEWSSLSGVYTAEEADFMHQLLGNCSAPEQLHENSNLGTQSTFWHDHESTIINHNCSYFRVEVPNTNFACSVQGSSSSTTSSNIFPTTSGVNRTSNNLVTNFGYMSMGFSKLRPYSVQGNDNKYINERKEILAGKEREILVSEPDEDKTRSLEKSSGKRSRSSNENKRNVKSKKNPRYASKSTEEECPQDLTLSSCCSDDESNVSQELHGGDPSSLSLKDSTTMKLSSKSTSSRGPATDPECLCKTLMRFFFCIVQRRRERINERLRILQNLVPNGTKVDINTMLEEVVQYVKFLQHQIKLLSSDDLWVYAPIAYNGMNIGLELNITSTKQPKKMHSKEYAAV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02466 351 SMART finulus 260 309 IPR011598 GO:0046983
Rops1g02466 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 318 IPR036638 GO:0046983
Rops1g02466 351 MobiDBLite consensus disorder prediction 150 192 - -
Rops1g02466 351 MobiDBLite consensus disorder prediction 210 245 - -
Rops1g02466 351 FunFam Basic helix-loop-helix transcription factor 260 312 - -
Rops1g02466 351 Pfam Helix-loop-helix DNA-binding domain 264 304 IPR011598 GO:0046983
Rops1g02466 351 CDD bHLH_AtIND_like 265 316 - -
Rops1g02466 351 Gene3D - 262 316 IPR036638 GO:0046983
Rops1g02466 351 MobiDBLite consensus disorder prediction 210 246 - -
Rops1g02466 351 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 327 - -
Rops1g02466 351 MobiDBLite consensus disorder prediction 150 194 - -
Rops1g02466 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02466 Rops-Chr1 47713548 47715020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02466 10 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 37.222 5.63e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g02466 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02466 - - gmx:100817334 333.954