Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02450 ATGATAATGAAGCAAAAGTCGAGCTCAGGTCGCCAAAGGATTCCAATTGAGAAAATATCAAGAAAGAGTAATTTACAAGTTACATTTTCAAAGCGTCGTTCGGGACTTTTCAAAAAGGCTAGTGAGCTTTGCACACTTTGTGGAGTGAAAATTGCAATAAGTGTTTTCTCACCAGCTGATAAGGCCTTCTCTTTCGGCCACCCAGAAGTTGAGTCCATAATTGATTGCTATCTGACTCAAAACTCTCTATTAGACCCCAATACTCACCAACACCAACTTGTTGAGGCTCATTGTAATGCTAATAATGTGCGTAATCTCAATATACAACTTACTCAGATTCTTAATCAGTTGGAGATTGAGAAAAAGCGAGGAGAAGAGCTAGACCGAGTGTGGAAAGCTAGGCAGAAACAATTCTGGTGGGAGAACCCCATTGATGAGCTTGGATTGGTGGAGTTACAACATTTAATGTTTTCGATGGAGGAACTGAAGAAGAATGTTGCAAAATATGCTAGCAAAACGTTGATGGAGCAAACAACCAGTATTACTTCACTTATTATTGGGCCTGGGCCCAATGAATTTGGGCTTCGTGATGCCTTTGAGAACAAACCTGCTGAGATTTATGCTAGTTCATCATTTGTTACTAAGGCCTCTAGTCTGAGTTTTTGTTATTGA 672 0.3988 MIMKQKSSSGRQRIPIEKISRKSNLQVTFSKRRSGLFKKASELCTLCGVKIAISVFSPADKAFSFGHPEVESIIDCYLTQNSLLDPNTHQHQLVEAHCNANNVRNLNIQLTQILNQLEIEKKRGEELDRVWKARQKQFWWENPIDELGLVELQHLMFSMEELKKNVAKYASKTLMEQTTSITSLIIGPGPNEFGLRDAFENKPAEIYASSSFVTKASSLSFCY* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02450 223 Coils Coil 100 123 - -
Rops1g02450 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Rops1g02450 223 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Rops1g02450 223 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Rops1g02450 223 Gene3D - 91 183 - -
Rops1g02450 223 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Rops1g02450 223 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Rops1g02450 223 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Rops1g02450 223 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Rops1g02450 223 PANTHER MADS BOX PROTEIN 11 167 - -
Rops1g02450 223 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Rops1g02450 223 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02450 Rops-Chr1 47357693 47358364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02450 6 198 Type I MADS-box Gene Family AT5G60440 47.739 2.23e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops1g02450 SRF-TF 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02450 - - lja:Lj0g3v0067779.1 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02450 1 47357693 47358364 Rops1g02450 1 47357693 47358364 ECH
Rops1g02450 1 47357693 47358364 Rops6g03018 6 53222989 53227601 PCT