Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02446 ATGCAAGAAATGCTCTGGAATAACAAAGGGAGAAGCTATCTGAAAACCAGTCCAATTAAAGACTGCACACCAGAGTGCCGAGGAAAATCTGCACCTAATAAAAAGGTGCTCAGCAGATTCGTCAACCTCAGAGCAAAAGACACAATGAAGATGCTGGTTCTGAAGAGGAATTTGTCTCCTTCTAAGGTTCATCAAGATGAAGAAAAAAGCCAAAGGACGCTGTTACAAGAGTTGACTAGCCCCAAGAATGTAGCAATTACACAAGAAGGTGAGTTGATTAGTTCCGATGAACTGTTGTTCATGACTTTAGCAACCATTAAGGGTGCTACTGGTGACTTTTCTGACACGAATAAGCTGGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGAGTTCTACCAGATGGTAATGAAGTAGCAGTTAAAAGATTATCAAGAAAGTCTTGGCAAGGCATAGAGGAATTCAAAAATGAGGTCATGCTGATTGCCAAACTTCAACACAGGAATTTGGTGAGACTGTTGGGCTGTGTCTTAGAGGGAGAGGAGAAGTTACTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAAAAACGTTCTAGACTTGTTTGGAAGACATGCTATGACATTATCAATGGCATAGCCAGGGGACTACTTTATCTTCACGAGGAGTCTCGGCTCAAAATCATTCACCGTGACCTCAAGCCAAACAATGTGTTGTTAGACCATGAAATGGTTGCCAAAATATCAGATTTTGGCATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAATACTAAAAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAGGGGTTGTTCTCTATGAAATCTGATGTCTTCAGCTTTGGTGTTATCTTGCTTGAAATCATCAGCGGGAAAAGAAATAGTGGCTTTTACATAACCGAACTTGCCCCGACCCTGCTGGCATATGCATGGCGGCTGTGGAATGAAGGAAAAGAATTGGAATTTGTGGATCGGGTGTTATTGGAATCAAGTCTTGCCTCTGAATCTGAAGTTGTAAGATGCATGCACATTGGGCTCCTGTGTGTGCAGGAAGATCCAGAACTCAGGCCTAGCATGTCAGATGTGGTGGTGGTTCTCCTGGGAAGTGAATCAATGGGCCTTCCCAAACCAAGGCAACCAGCATTTTCTTTAGGTAGGGTGCTTCATGTTGATCCATCTACACCAACAACAAATCCTTCAGTGAATGAGATTATGTGGTATGAGCTCTACCCTTTCTATCGCACCACCGCTTCGCCTCCGCCAGCAACTTCACCACCGCTTCTTCCTCCTCCCACAACTCCAACTTCTGCAAATTCTGGAGGAAACAGTGGGATTTCAGCAGGGACTATTATTGCTATTGTCGTTCCAATCACGGTCGCTGTGCTTCTATTTATCGTGGGCATTTGTTTCTTGAGTAAAAGAGCAAGGAAGAAGCGTGATGATTCTGTACAAGAAGGAAAGACTGCATATGACATCACCACTGTGGAGTCCTTGCAATTTGATTTTGGGACAATTGAAGCCGCCACAAACAAATTCTCTGCAGATAACAAGCTGGGTGAAGGTGGATTTGGTGAGGTTTATAAGGGCACTCTTCCAAGCGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGCTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTAGTGGTTGCCAAGCTTCAACACAGAAACTTGGCGAGACTTCTGGGATTTTGCTTGCAAGGGGAAGAAAAGATACTTGTTTACGAATATGTGCCCAACAAAAGTCTGGACTATACTCTTTTTGATCCTGTAAAGCAAATAGAGTTGGATTGGACTAGACGTTACAAGATTATTGGAGGGATTGCTCGAGGAATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATCCATCGTGATCTCAAAGCTAGTAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTCGATCAAACTCAAGGAAACACCAGCAGAATTGTAGGGACTTATGGTTACATGTCTCCAGAGTATGCAATGCATGGGGAGTTCTCTGTTAAGTCTGATGTTTACAGTTTTGGAGTCCTCATTTTGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGACGGTGCTGAGGATCTATTGACCTATGCTTGGAAACTTTGGAAGGATGGAGTACCCTTGGAACTGATGGACCCCATATTAAGAGAATCCCATAGTCCAAATGAAGTAATCAGAAGCATCCATATTGGTTTGCTGTGTGTCCAAGAAGATCCAGCTGACAGACCAACAATGGCTACAATAGTTCTTATGCTGGACAGTAACACTGTTACTCTACCAACTCCAAAGCAGCCTGCATTTTTCATCCACAGTGGAACTGATCCAAACATGCCAAAGGAGCTGCAATTTGATCAATCTACAACAAAGTCAATACCAATGTCTGTGAATGAGATGTCCATTAGTGAAATGGATCCTCGATAA 2574 0.4242 MQEMLWNNKGRSYLKTSPIKDCTPECRGKSAPNKKVLSRFVNLRAKDTMKMLVLKRNLSPSKVHQDEEKSQRTLLQELTSPKNVAITQEGELISSDELLFMTLATIKGATGDFSDTNKLGQGGFGAVYKGVLPDGNEVAVKRLSRKSWQGIEEFKNEVMLIAKLQHRNLVRLLGCVLEGEEKLLIYEFMSNKSLDQFIFDPEKRSRLVWKTCYDIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHEMVAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSMKSDVFSFGVILLEIISGKRNSGFYITELAPTLLAYAWRLWNEGKELEFVDRVLLESSLASESEVVRCMHIGLLCVQEDPELRPSMSDVVVVLLGSESMGLPKPRQPAFSLGRVLHVDPSTPTTNPSVNEIMWYELYPFYRTTASPPPATSPPLLPPPTTPTSANSGGNSGISAGTIIAIVVPITVAVLLFIVGICFLSKRARKKRDDSVQEGKTAYDITTVESLQFDFGTIEAATNKFSADNKLGEGGFGEVYKGTLPSGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVPNKSLDYTLFDPVKQIELDWTRRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSVKSDVYSFGVLILEIISGKKNSSFYETDGAEDLLTYAWKLWKDGVPLELMDPILRESHSPNEVIRSIHIGLLCVQEDPADRPTMATIVLMLDSNTVTLPTPKQPAFFIHSGTDPNMPKELQFDQSTTKSIPMSVNEMSISEMDPR* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02446 857 ProSiteProfiles Protein kinase domain profile. 113 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02446 857 FunFam Cysteine-rich receptor-like protein kinase 10 76 188 - -
Rops1g02446 857 CDD STKc_IRAK 119 386 - -
Rops1g02446 857 SUPERFAMILY Protein kinase-like (PK-like) 517 825 IPR011009 -
Rops1g02446 857 Pfam Protein tyrosine and serine/threonine kinase 116 384 IPR001245 GO:0004672|GO:0006468
Rops1g02446 857 Pfam Protein tyrosine and serine/threonine kinase 534 801 IPR001245 GO:0004672|GO:0006468
Rops1g02446 857 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 493 607 - -
Rops1g02446 857 Gene3D Phosphorylase Kinase; domain 1 492 607 - -
Rops1g02446 857 Gene3D Phosphorylase Kinase; domain 1 72 188 - -
Rops1g02446 857 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 449 857 - -
Rops1g02446 857 FunFam cysteine-rich receptor-like protein kinase 10 608 810 - -
Rops1g02446 857 SMART serkin_6 532 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02446 857 SMART serkin_6 113 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02446 857 ProSiteProfiles Protein kinase domain profile. 532 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02446 857 ProSitePatterns Protein kinases ATP-binding region signature. 119 141 IPR017441 GO:0005524
Rops1g02446 857 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Rops1g02446 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Rops1g02446 857 Gene3D Transferase(Phosphotransferase) domain 1 189 392 - -
Rops1g02446 857 Gene3D Transferase(Phosphotransferase) domain 1 608 812 - -
Rops1g02446 857 CDD STKc_IRAK 538 804 - -
Rops1g02446 857 MobiDBLite consensus disorder prediction 440 460 - -
Rops1g02446 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Rops1g02446 857 FunFam Uncharacterized protein 189 393 - -
Rops1g02446 857 SUPERFAMILY Protein kinase-like (PK-like) 95 386 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02446 Rops-Chr1 47293199 47305039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02446 427 822 Receptor kinase-like Gene Family AT4G23230 66.332 1.47e-179 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops1g02446 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02446 - - gmx:100305391 725.702