LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g02444	ATGATCCATTCTCTTATGGTTTCCAAATCCATTCAATTCTTCCTTTTTCTTTGTATTCTTGCATTACTTTCAGATGTTGCCTTTGCCGACCCTCCATATGAAATTTGTTCCACAAGTAGTAGCTATGCAAATGGAAGTTCCTTCCAAAACAATCTAAACAACCTCCTTCTCTCTTTAGCCTCCAATGGTTCAATCTCCAAATCCTATAACACTTCTTTCGGATTTGCCCCTGATAGAGTTTATGGCCTCTACATGTGTCTCAACTATGTTTCCAATGAAACTTGCCAGAAATGCATAACAAATGCCATAGAGGACATTGTCATACTCTGTCCTCAAGCAGAAGAAGCAGTTGTATGGGAGGAGACCTGCCAATTACGCTATTCCAATAACAATTTCATAGGTAAGTTGAATGTCACAGGGAACATTGGCAAGGATAACAAACAGAATATTTCAGACCCAGAAAAATCTGAGTCTGCTGTGAATGAGATCCTGAGTAATCTTACAGAGATAGCATCTTTTAATGCTTCAGCAAACAAGTATGCTATTGGAAAAGTTCCCTTTGAAAATCAAACAATATATGCCTTAGTGCAGTGCACCAGAGATTTATCAGCTAATGACTGCAGTAAGTGCCTGCAAAGTGGCATAAGAGATATACCAGGTTGTTGCTATGCCTCCATCGGTGCCAGAGTTCTTAGTCGGAGCTGTTATTTGAGATATGAATTGTATCCGTTTTATCTTGGGGTATCAGAACCCACAGCCACAGGTTCTTCAACCGGTAATAATGAAGGCATTACTTCAACCGAAAATTCAAGCAAAATATGGAAGATTACAGCAATTGTAGTTGCGGGAGGCTTGGTGATAATATTTTCCATTTGCTCCTTGTACTTTGTCAGGAATAAAAGAAATCGGCAAAGTAAGAATGGAATAGGCAAAATATCTGAGGACTTCCCTTTTATAGATCTTAGATCTCTTTGTGTGGCTACCAATAACTTTTCTGATTTAAATAAGCTTGGACAAGGTGGCTTTGGGCCTGTTTACAAGGGGATACTTAGTGATGGCCAGGAAGTAGCAATCAAGAGACTCTCAAGTTGCTCAGAGCAGGGCTCAGAGGAATTCATAAACGAGGTTCTGTTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTGGCTTTTTGTGTAGATGGAGAAGAGAAGCTTCTTGTATATGAATTTTTGCCCAATGGTAGCCTTGATGTTGTCCTTTTTGATCCAAAGCAACGTGCACGGCTCGATTGGACCAAACGCCTTGATATAATAAATGGAATAGCAAGGGGGATTCTTTATCTTCATGAGGATTCTCGACTTAAAATAATTCATAGAGATCTGAAAGCAAGTAATGTGTTGTTGGACTATGACATGAACCCAAAGATTTCAGATTTTGGAATGGCCAGAATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATCGTTGGCACATATGGATATATGGCTCCAGAGTATGCAATGGAGGGGTTATATTCCATAAAATCTGATGTTTTTGGCTTTGGAGTTCTATTGCTTGAGATCATTACAGGGAAACGTAACTCGGGTTTCTATTACTCTAAAAGCACTCCTAGCCTTTTAGCATATACATGGCATCTATGGAATGAGGGGAAGGGGCTGGAGTTAAAGGATCCCTTGTTATCTGATTCATGCCCTGGAGATCAGTTTTTGAGATACATGAATATTGGACTGCTATGTGTTCAAGAAGATGCATATGATAGGCCAGCCATGTCTTCTGTTGTTTTGATGTTGAAGAATGAATCAGTAACGCTTGACCAACCAGCAAGACCTCCTTTCTCTGTAGGGAGACTCAATGATCGTAATGAGCCAGATTGCGAAGAATGCTCAGTCAATTTCTTAACTGTTTCTGAGATATTGCCTCAGTGA	1941	0.3967	MIHSLMVSKSIQFFLFLCILALLSDVAFADPPYEICSTSSSYANGSSFQNNLNNLLLSLASNGSISKSYNTSFGFAPDRVYGLYMCLNYVSNETCQKCITNAIEDIVILCPQAEEAVVWEETCQLRYSNNNFIGKLNVTGNIGKDNKQNISDPEKSESAVNEILSNLTEIASFNASANKYAIGKVPFENQTIYALVQCTRDLSANDCSKCLQSGIRDIPGCCYASIGARVLSRSCYLRYELYPFYLGVSEPTATGSSTGNNEGITSTENSSKIWKITAIVVAGGLVIIFSICSLYFVRNKRNRQSKNGIGKISEDFPFIDLRSLCVATNNFSDLNKLGQGGFGPVYKGILSDGQEVAIKRLSSCSEQGSEEFINEVLLIMKLQHKNLVKLLAFCVDGEEKLLVYEFLPNGSLDVVLFDPKQRARLDWTKRLDIINGIARGILYLHEDSRLKIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNSGFYYSKSTPSLLAYTWHLWNEGKGLELKDPLLSDSCPGDQFLRYMNIGLLCVQEDAYDRPAMSSVVLMLKNESVTLDQPARPPFSVGRLNDRNEPDCEECSVNFLTVSEILPQ*	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g02444	646	CDD	STKc_IRAK	337	604	-	-
	Rops1g02444	646	ProSiteProfiles	Protein kinase domain profile.	331	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g02444	646	SUPERFAMILY	Protein kinase-like (PK-like)	315	624	IPR011009	-
	Rops1g02444	646	Pfam	Salt stress response/antifungal	148	242	IPR002902	-
	Rops1g02444	646	Pfam	Salt stress response/antifungal	36	129	IPR002902	-
	Rops1g02444	646	ProSiteProfiles	Gnk2-homologous domain profile.	30	132	IPR002902	-
	Rops1g02444	646	FunFam	Cysteine-rich receptor-like protein kinase 10	141	244	-	-
	Rops1g02444	646	Pfam	Protein tyrosine and serine/threonine kinase	335	599	IPR001245	GO:0004672\|GO:0006468
	Rops1g02444	646	FunFam	Cysteine-rich receptor-like protein kinase 10	297	406	-	-
	Rops1g02444	646	SMART	serkin_6	331	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g02444	646	FunFam	Cysteine-rich receptor-like protein kinase 28	32	131	-	-
	Rops1g02444	646	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	38	641	-	-
	Rops1g02444	646	Gene3D	-	31	132	IPR038408	-
	Rops1g02444	646	Gene3D	-	141	244	IPR038408	-
	Rops1g02444	646	ProSiteProfiles	Gnk2-homologous domain profile.	138	244	IPR002902	-
	Rops1g02444	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Rops1g02444	646	Gene3D	Transferase(Phosphotransferase) domain 1	407	612	-	-
	Rops1g02444	646	Gene3D	Phosphorylase Kinase; domain 1	293	406	-	-
	Rops1g02444	646	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	407	610	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g02444	Rops-Chr1	47288267	47290796	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g02444	14	645	Receptor kinase-like Gene Family	AT4G05200	44.292	1.57e-178	521

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops1g02444		PK_Tyr_Ser-Thr	7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g02444	-		-	gmx:102669364	1001.12