Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02440 ATGGATGCCCAACAATCTCTGTTAGACAAGCCTAGAAAATCCGTTTCCAAAACTTTCTGGTTACTCCTCTTTGTGTCTGCTGTTGTAAGCTCATCAACCCTTGTTGCTTTTTATCTTGTCAAACCCAACTCCTTCTTCAACCTCTCCTTACCTCACGATGTCTGTGAACATGCAGTTAATACCACATCTTGCTTAGCCCATGTCTCAAAAGTAGCTCAAGGTTCGGTCTTGTCAGCAAGAAAAGACCGCAAATTCAATTTGCTCCTATCCTTCCTGATTAAGTCCATCTCACATATTCAGAAAGCTATGGACGTAGAAAATGCTATCAAACTCAAGATTAATAATCCCAAGGAGCAAGCAACTTTGCACGACTGTGAGAAGCTAATGGACTTATCCATGGATAGAGTTAGGGACTCAGTGATGGCTCTAACAAAACAGACCACTGATTCACTACAAGATGCACACACATGGCTAAGCAGCGTGCTCACTAACCATGCCACTTGCTTGGATGGATTGGAGGGGTCAGCACGGGCCATGATGGAGGCTGAGCTTGAGGACTTGATTTCTAGAGCAAGAACCTCTCTGGCCTTGCTTGTTGCTGTTTTGCCTCCAAATCCAAATGGATGGGCAGAATGGGATGCCCAGCATAAGGATTATCTTAAAACGTTGTATTATGGCGAATACATGAACAATGGACCAGGTGCTGGTACCAGCAAGAGAGTGAAGTGGCATGGTTACCAGGTTATTACAAGTGCAGCAGAGGCCAGCAAGTTCACAGTAGCACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACTGGGGTCAATTACATTGAGGGCCTCTAG 846 0.448 MDAQQSLLDKPRKSVSKTFWLLLFVSAVVSSSTLVAFYLVKPNSFFNLSLPHDVCEHAVNTTSCLAHVSKVAQGSVLSARKDRKFNLLLSFLIKSISHIQKAMDVENAIKLKINNPKEQATLHDCEKLMDLSMDRVRDSVMALTKQTTDSLQDAHTWLSSVLTNHATCLDGLEGSARAMMEAELEDLISRARTSLALLVAVLPPNPNGWAEWDAQHKDYLKTLYYGEYMNNGPGAGTSKRVKWHGYQVITSAAEASKFTVAQLIQGNVWLKNTGVNYIEGL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02440 281 CDD PMEI-like_4 57 201 - -
Rops1g02440 281 PANTHER PECTINESTERASE 205 271 - -
Rops1g02440 281 Pfam Pectinesterase 205 267 IPR000070 GO:0030599|GO:0042545
Rops1g02440 281 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Rops1g02440 281 SMART PMEI_2 46 197 IPR006501 GO:0004857
Rops1g02440 281 Gene3D - 202 281 IPR012334 -
Rops1g02440 281 Pfam Plant invertase/pectin methylesterase inhibitor 51 189 IPR006501 GO:0004857
Rops1g02440 281 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Rops1g02440 281 NCBIfam pectinesterase inhibitor domain 21 181 IPR006501 GO:0004857
Rops1g02440 281 SUPERFAMILY Pectin lyase-like 205 280 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02440 Rops-Chr1 47215049 47217289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02440 205 281 Carbohydrate Esterase AT1G11580 58.442 4.59e-24 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02440 K01051 - gmx:100815836 258.455