Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02437 ATGTTTGATCCTTCTTCTGACTATCACATGCTTGATATATCATCCCTCAAGACTCCCTCTGAGAGTGATTTGGGAAGGGCCAGAGATGATGACTATGAGAGCAAATCTGGCACCGAGATCATGGAAGCTCCTTCCGGTGATGACCAAGAACCCAACCAACTACCCAAAAAGAAGGGCTACCACCGCCACACACAGCACCAAATACAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGTTGGGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTCTGGTTCCAAAACAAGCGCACCCAGATGAAGGCTCAACATGAACGACATGAAAATGCTATTTTGAGGGCTGAGAATGAAAAGCTTCGTGCTGAGAACAATAGGTACAAGGAGGCCCTAAGTAATGCTACATGCCCCAACTGTGGAGGCCCAGCTACTCTTGGTGAGATGTCCTTTGACGAGCAGCACTTGAGGATTGAGAATACCCGATTAAGAGAAGAGATTGATAGGATGTCAGGTATTGCGGCGAAATATGTTGGAAAGCCCGTGACTTCCTACTCCAACCTTTCAGCTCACAACAACAATCACATGCCTTCACGCTCACTTGATCTTGGAGTTGGTAACTGTGGAGCACAGTCAAGCATCGTAGGAGAAATGCATGGTGGTAGTGACCTTCTTAGGTCACTCCCAGTTCCTTCTGATGCTGACAAACCCATGGTTGTGGAGCTTGCCGTTGCAGCAATGGAGGAACTAACAAGATTAGCTCAGACTGGTGACCCTTTATGGGTCCCCAGCAACAACCAGACTGAGATTCTAAATGAAGATGAATACTTTAGGACTTTCCCTAGGGGTATAGGCCCTAAACCCTTGGGCTTAAGATCGGAAGCGTCGAGAGAATCCGTGGTGGTTATCATGAATCACACTAACCTCGTTGATATCCTTATGGATGTGAACCAATGGTCAACTGTGTTTTGCGGCATTGTTTCAAGAGCATTGACACTTGAAGTCCTTTCAACTGGAGTGGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAGGTCCCTTCACCACTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCATCCAGATGGGGTATGGGCGGTGGTTGATGTTTCCTTGGATAATCTGCGACCTAATACAATATCAAGAAGTCGAAGAAGGCCCTCTGGTTGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATTGAACATGTAGAAGTGAATGATAGAGCAGTACATAATATATATAGACCACTAGTTGATTCTGGCCTTGCCTTTGGGGCTAAACGCTGGTTAGCTACATTAGATAGACAATGTGAACGTCTTGCTAGTTCAATGGCCACCAACATACCAGCAGGGAACCTTTGTGTGATAACCAGTCATGAGGGAAGGAAAAGTATGCTGAAGCTGGCGGAGAGAATGGTAATTAGCTATTGCACTGGTGTAGGTGCTTCTACAGCACATGCTTGGACAACACTATCCTCAACTGGATGCGATAGTGTAAGGGTCATGACCAGAAAGAGCATGGATGAACCTGGCCGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTTCCAGTCCCTCCAAAGAGGGTTTTTGATTTCCTTCGAGACGAAAACTCAAGAAGTGAGTGGGATATTCTCTCCAACGGGGGTCTAGTTCAAGAAATGGCACACATAGCAAATGGTCGTGATCCTGGCAATTGTGTCTCTTTACTTCGTGTCAATAGTGCAAATTCCAGCCAAAGTAATATGCTAATACTTCAAGAGAGTTGCACTGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCCATGAATGTAGTCTTGAGTGGTGGGGATCCAGATTATGTTGCCCTGCTGCCCTCAGGCTTCGCTATTCTTCCTGATGGGCCTGGATCAAATGGAGGCCCAATACTTGATGTTGGATCTGGAGGTTCTCTACTGACAGTTGCATTTCAGATCTTGGTTGATTCAGTCCCAACAGCAAAACTATCTCTAGGTTCAGTGGCCACTGTTAATAGTTTAATTAACTGCACAGTTGAAAGGATCAAAGTTGCAGTGATACGTGACAGCACCTAA 2187 0.4595 MFDPSSDYHMLDISSLKTPSESDLGRARDDDYESKSGTEIMEAPSGDDQEPNQLPKKKGYHRHTQHQIQEMEAFFKQCPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMKAQHERHENAILRAENEKLRAENNRYKEALSNATCPNCGGPATLGEMSFDEQHLRIENTRLREEIDRMSGIAAKYVGKPVTSYSNLSAHNNNHMPSRSLDLGVGNCGAQSSIVGEMHGGSDLLRSLPVPSDADKPMVVELAVAAMEELTRLAQTGDPLWVPSNNQTEILNEDEYFRTFPRGIGPKPLGLRSEASRESVVVIMNHTNLVDILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHPDGVWAVVDVSLDNLRPNTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVNDRAVHNIYRPLVDSGLAFGAKRWLATLDRQCERLASSMATNIPAGNLCVITSHEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSSTGCDSVRVMTRKSMDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGSNGGPILDVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLINCTVERIKVAVIRDST* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02437 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 723 IPR042160 -
Rops1g02437 728 ProSiteProfiles START domain profile. 241 472 IPR002913 GO:0008289
Rops1g02437 728 Gene3D - 302 470 IPR023393 -
Rops1g02437 728 SUPERFAMILY Bet v1-like 242 471 - -
Rops1g02437 728 CDD START_ArGLABRA2_like 245 468 - -
Rops1g02437 728 SMART HOX_1 56 118 IPR001356 GO:0003677
Rops1g02437 728 FunFam Homeobox-leucine zipper protein GLABRA 2 250 468 - -
Rops1g02437 728 Coils Coil 108 143 - -
Rops1g02437 728 Gene3D - 44 130 - -
Rops1g02437 728 SMART START_1 250 469 IPR002913 GO:0008289
Rops1g02437 728 Pfam Homeodomain 57 112 IPR001356 GO:0003677
Rops1g02437 728 MobiDBLite consensus disorder prediction 1 65 - -
Rops1g02437 728 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Rops1g02437 728 MobiDBLite consensus disorder prediction 22 37 - -
Rops1g02437 728 Pfam START domain 251 469 IPR002913 GO:0008289
Rops1g02437 728 SUPERFAMILY Homeodomain-like 43 114 IPR009057 -
Rops1g02437 728 SUPERFAMILY Bet v1-like 490 719 - -
Rops1g02437 728 FunFam Homeobox-leucine zipper protein HDG1 44 130 - -
Rops1g02437 728 CDD homeodomain 57 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02437 Rops-Chr1 47161444 47165439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02437 1 726 Homeobox Transcription Factor Family AT4G21750 77.034 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops1g02437 START 8.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02437 K09338 - gmx:100782240 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02437 1 47161444 47165439 Rops1g02437 1 47161444 47165439 ECH
Rops6g02974 6 52702512 52705563 Rops1g02437 1 47161444 47165439 ECH
Rops1g02437 1 47161444 47165439 Rops6g02974 6 52702512 52705563 PCT