Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02434 ATGAGCAATGAGGTCGTGCAGAAGCCTCCACCGTCGATTCTCGTGGCCAGATTCAAGGCTTTTCTCAAGCAACGCGATGATGACCCCAGGCTTAGGGTTTCGCCCCCAACCACTGAAGAAATTGTGCAGATTTATGAGTTGTTGTTGTCGGAACTCACCTGCAATGTGAAACCCATCATCACCGATCTTACCATTATTGCTGAGCAGCAGAGGGACCATGCCAAGGGCATCGCTGATGCTATTTGCGCTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATTGTGAAAAATGTTGGCCAGGAATATGTTAGATACTTCTCTTTACGTCTACCTGAAGTTTTCTGTGAGGCATACCTACAGGTTCAACCTAATTTGCATTCTGCTATGCGACATCTGTTCGGTACCTGGTCAAAAGTCTTCCCTACCTCTATCCTACGCAAGATTGAAGCTCAATTGCAATTTTCTCAGGCAGTTAATAATCAACCATCCAATGTTAATGCCCTCAGGACTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAATCCGAAATATGTTGGAGGTGAAAGGTTGGACACAGCAGGGACTGTAGGTAATGCAAGTTTTGGCCTTGTAGCTAGTAAGATCCATCAATTTGTTCCTAGTAGGCTCGGAAGATCCTCCTCACCTGCAAGAACGGGACTCGATAGGCCTTTGTCCACCTATATGGATGAATATGCAGCTGACAGTTCTGCTGGCAGGACAGTTGAGAGAGAATCTCCTCACCCTGCCATTGATTATGGAGTAGCTAAAGCACTAGGTAGAGAAGAAGAGTTGAGTGAGTGGCAGCGAAAGCAGTTCTTTGGTGACGGTCGGAAGAGATTTCCAACATCTATGACACACAGTCTTAGTAATGGACAACAGCGTCAAAGTCCTAGAGCTCTAATTGATGCATACGGCAGTGACAAAAGCCAAGAAACTTCTAGCAGTAAGCCTTTGTTAGCTAAACGGCTGGATAGAAATGGTATAGACAAGGTTTTGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGCAGACCATGGTAGAAATAATGGTTTCCTGCAATCAACAATTGTTGCAGCTAATGCAACTTCTTCAGAGCAAGATACCAGGAAGGGTTGGTCTAGTGGATCTCAGCTTCCTCCACTGGATGATTCCTCTGTTATAGCAGAAGATGCATTTGCCTCTTCAGCTTATAGTCGTGGATTCCAGAATCAAATAAATCAGAGTTTGGGCTCTGGTCAACATCTTGATGCTTGGAAGATTTCTAATCATCCATCTAATTCTACGCAACACCTCTTTAATATTAGGGGAGGAGGGAGGAGTCTCCTGATGCCTCCTATCGATAACATTCCCAATACTGATGTAAACTCATATGGGACTCGACTGGCTGTGTCAAGGATGGTTCCTGGTCTCAAGTCTAACGTGGAGGGTCCTCTGCCAGTTTTGCCCACAACATTTGAAATGAGGCCCTCTGTAAATGTGCATGCTGGTCGTCCTCCCAGCTTAAATCCGGTATTTCCATTGAAAAATCTTGTTAGGAGTCAATTTGAATCAATAAATGCTAATAATACCATTGTGAGCCATGGTCCAAATAAATCTTTGCTTATGCGTGAACAATCATTGCACAATGTTGAGAACAAAGACATTGGTAAAGGAAACCTACATCAGTTACCTAATCAGCTACCTGGCCTGATTTCATCCAACCCACCAAACCGTGGACAAGCTCCACAATTACAGCGATTTCCTTCTCAGGATCCAACAGCATCACAATTTAGTTATGGGAGCTCTTTTCAAGGACATAATGCTGCTATAAATACACCCGGGTCCAATGTGCCACCTGTTATGCCATTCCCTTTACCAGGCCAAAGTATTGCAAATAACTTTCTACATTTACAAGGGGGAGCCTTGCCACCTTTACCTCCACCCCGCCTTCCTGCTCCATCACAAATGCTACCTCATCCTAATCCTAGTCCTTTTGCGTCAAGTCAACAGCCAACTGTTGCATATTCTAGTTTGATTAATACACTCATGGCCCAAGGTGTAATCTCATTGACTAATCAGACACCTGCACAGGATTCTGTTGGAATTGAGTTTAATCCAGATATTCTGAAGGTTCGTCATGAATCTGCAGTCAGTGCCTTATATGGTGATCTCCCTAGACAATGCACAACTTGCGGTCTCCGATTCAAATGCCAAGATGAGCACAGTAATCACATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAACCGAAAGCAGAAGCCCTCTCGTAAGTGGTTTGTCAGTGGGAGAATGTGGCTTAGTGGTGCAGAGGCATTGGGAATGGAATCAGTTCCAGGTTTTTTACCAACTGAGACCATTGAGGAAAAGAAAGAAGATGAAGAGTTGGCCATTCCAGCTGAAGAGGATCAGAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATATCTTAATGCACCCAATGGAACAACAGCAGGCATGGACAGGTCACAATTAGGCCCCATTATTCACGCTAAATGTAGATCTGAATCTAGTATAGCCCCATGTGAAGATTTTGGGCCGGATGAAGGGGGCACCTATGAGGAAGGAGGCAGTCAAAGAAAACGAATGCGGGGTTGA 2754 0.4441 MSNEVVQKPPPSILVARFKAFLKQRDDDPRLRVSPPTTEEIVQIYELLLSELTCNVKPIITDLTIIAEQQRDHAKGIADAICARILEVPADQKLPSLYLLDSIVKNVGQEYVRYFSLRLPEVFCEAYLQVQPNLHSAMRHLFGTWSKVFPTSILRKIEAQLQFSQAVNNQPSNVNALRTSESPRPTHGIHVNPKYVGGERLDTAGTVGNASFGLVASKIHQFVPSRLGRSSSPARTGLDRPLSTYMDEYAADSSAGRTVERESPHPAIDYGVAKALGREEELSEWQRKQFFGDGRKRFPTSMTHSLSNGQQRQSPRALIDAYGSDKSQETSSSKPLLAKRLDRNGIDKVLTTSWQNTEEEEFDWEDMSPTLADHGRNNGFLQSTIVAANATSSEQDTRKGWSSGSQLPPLDDSSVIAEDAFASSAYSRGFQNQINQSLGSGQHLDAWKISNHPSNSTQHLFNIRGGGRSLLMPPIDNIPNTDVNSYGTRLAVSRMVPGLKSNVEGPLPVLPTTFEMRPSVNVHAGRPPSLNPVFPLKNLVRSQFESINANNTIVSHGPNKSLLMREQSLHNVENKDIGKGNLHQLPNQLPGLISSNPPNRGQAPQLQRFPSQDPTASQFSYGSSFQGHNAAINTPGSNVPPVMPFPLPGQSIANNFLHLQGGALPPLPPPRLPAPSQMLPHPNPSPFASSQQPTVAYSSLINTLMAQGVISLTNQTPAQDSVGIEFNPDILKVRHESAVSALYGDLPRQCTTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSGRMWLSGAEALGMESVPGFLPTETIEEKKEDEELAIPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGMDRSQLGPIIHAKCRSESSIAPCEDFGPDEGGTYEEGGSQRKRMRG* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02434 917 ProSitePatterns Zinc finger C2H2 type domain signature. 750 770 IPR013087 -
Rops1g02434 917 Gene3D - 33 163 IPR008942 -
Rops1g02434 917 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Rops1g02434 917 SUPERFAMILY ENTH/VHS domain 37 162 IPR008942 -
Rops1g02434 917 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 36 891 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Rops1g02434 917 FunFam polyadenylation and cleavage factor homolog 4 34 162 - -
Rops1g02434 917 MobiDBLite consensus disorder prediction 293 315 - -
Rops1g02434 917 Pfam CID domain 55 156 IPR006569 -
Rops1g02434 917 CDD CID_Pcf11 45 162 IPR047415 -
Rops1g02434 917 SMART 558neu5 40 162 IPR006569 -
Rops1g02434 917 MobiDBLite consensus disorder prediction 891 917 - -
Rops1g02434 917 MobiDBLite consensus disorder prediction 300 315 - -
Rops1g02434 917 MobiDBLite consensus disorder prediction 592 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02434 Rops-Chr1 47048618 47055157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02434 688 916 C2H2 Transcription Factor Family AT4G04885 69.869 4.27e-106 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02434 K14400 - gmx:100794796 1300.03