LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g02433	ATGAGAGCTCCTCAACCCGCGCCGTTTCTCTTAGCCTCATCGGTTCAAAGACTCGTAGTGAGAATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTATAATGCTGAGAAACGTGGGAAGCGCCAGGTCATGATCAGGCCATCCTCAAAAGTGATTATAAAATTCCTTTTGGTGATGCAGAAGCATGGATACATTGGGGAGTTTGAGTATGTTGATGACCACAGGGCTGGCAAAATTGTGGTTGAATTGAATGGGAGACTGAACAAGTGTGGGGTTATTAGCCCCCGTTTTGATGTTGGGGTCAAAGAGATTGAAGGTTGGACTGCAAGGCTGCTCCCATCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAG	456	0.4561	MRAPQPAPFLLASSVQRLVVRMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g02433	151	Gene3D	-	91	151	-	-
	Rops1g02433	151	ProSitePatterns	Ribosomal protein S8 signature.	121	138	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Rops1g02433	151	Gene3D	-	22	90	-	-
	Rops1g02433	151	Hamap	30S ribosomal protein S8 [rpsH].	23	151	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Rops1g02433	151	SUPERFAMILY	Ribosomal protein S8	25	151	IPR035987	GO:0003735\|GO:0005840\|GO:0006412
	Rops1g02433	151	FunFam	40S ribosomal protein S15a	91	151	-	-
	Rops1g02433	151	FunFam	40S ribosomal protein S15a	22	90	-	-
	Rops1g02433	151	Pfam	Ribosomal protein S8	28	151	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Rops1g02433	151	PANTHER	40S RIBOSOMAL PROTEIN S15A	22	150	IPR000630	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g02433	Rops-Chr1	47046050	47048057	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g02433	22	151	Cytoplasmic Ribosomal Protein Gene Family	AT5G59850	97.692	9.12e-94	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g02433	K02957		-	thj:104809034	264.618