Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02430 ATGCCGGGGCGTCGGTCGAAGTCGGAGAAGAAGCACGACGGCGAGAAGCAGCTCCGGCGGGATCCTTATGAGGTCCTTGACGTTTCACCAAACTCCACCGATCAGGAAATCAAAACCGCTTACTGGAAAATGGCACTCAAATACCATCCTGACAAGAATGCCAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCTTATAACATCTTGGCAGATCCTGACAAACGGCGTCAGTATGACTCAGCTGGCTTTGAGGCTGTTGAATCAGATAGCCAAGAGTTGGAGTTGGATCTTTCAAGTTTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGCAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCAACTGTTTTGGAAGAGGCACTCAATGGTTTAGTTACCATTCGTCCACTTCCATTTGGACAGTTTATAACTAGAAGGGTTGAGAAGCAATGTGCACACTTTTATTCAGTTACGATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTGCAATCATCAGACAAAAGCAAGTTCAAGTTATTGTATTTTGATCAGGAAGACAATGGTGGCTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACTGGGGAGGTTACCTCTGCTGGAATGTATTTTCTTGGGTTTCCTGTTTATCGGTTGGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTGGATGCGTTCCAGCCTTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCCGTTTATGGTGACAACTTCTTCAAAAGTGCAAACTATACAATAGAATCCCTGTGTAGCTCTCTGTTTGATGCGCCAACATGCCACGCTGCATGTAGCTTGCATGCAGGGACGTAG 921 0.4397 MPGRRSKSEKKHDGEKQLRRDPYEVLDVSPNSTDQEIKTAYWKMALKYHPDKNANDPKAADMFKEVTFSYNILADPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPFGQFITRRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGEVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDAFQPCELTELKAGTHVFAVYGDNFFKSANYTIESLCSSLFDAPTCHAACSLHAGT* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02430 306 Gene3D DnaJ domain 5 104 IPR036869 -
Rops1g02430 306 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Rops1g02430 306 FunFam Chaperone protein dnaJ 16 4 103 - -
Rops1g02430 306 ProSiteProfiles dnaJ domain profile. 21 86 IPR001623 -
Rops1g02430 306 SUPERFAMILY Chaperone J-domain 20 90 IPR036869 -
Rops1g02430 306 PRINTS DnaJ domain signature 78 97 IPR001623 -
Rops1g02430 306 PRINTS DnaJ domain signature 23 41 IPR001623 -
Rops1g02430 306 PRINTS DnaJ domain signature 58 78 IPR001623 -
Rops1g02430 306 PRINTS DnaJ domain signature 41 56 IPR001623 -
Rops1g02430 306 Pfam DnaJ domain 21 83 IPR001623 -
Rops1g02430 306 CDD DnaJ 21 75 IPR001623 -
Rops1g02430 306 SMART dnaj_3 20 78 IPR001623 -
Rops1g02430 306 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g02430 306 MobiDBLite consensus disorder prediction 1 30 - -
Rops1g02430 306 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 7 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02430 Rops-Chr1 47003665 47004585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02430 19 84 C2H2 Transcription Factor Family AT1G74250 38.028 2.00e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02430 - - lja:Lj2g3v1370280.1 526.168