Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02423 ATGGATACGATGCTACAAACCATTGCTACTGTGGTCCTTCTCCTTATGCTTCTTCTCATCCTCATCTTCCTTTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGGTTCCGCTCTTCCATCAAGGGTGGTGAGTTAGAGAGGCCCCTCGTTGTAGATGAAAACGATGCAAATGTGTCATTGAATCAGAGCAATGAATTGCCTAGAGATTATGATCTTGAAGGTGCCTGTTATCCCAATGAAGCTCATTTTCGATCACCTCGAACCCATGGTCAAGAACTTGTTCATAAGCAAAGGCTTCAACCCCTTTCTCCTTCACCTAATATGCCACAAGGGGATTCTTTGGTTGTGGATGTAATCTCTGATCCTTCTGAAGATGTTGATGTTGGTCAAACACTTAAGCTTTCTCCAGCTCACTTTGCTCATATTCAGAAACATAGCACACCCAATTTTCAATATGATAGATTGCAAGATTTTGTGCAAAGAGATATCTTTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATTAGTGGTCCTTCCCGTGGACTTCGTTGTTCTGTACAGTCAACAAATCCCTCTCGTCTACCGCTAACCTTGGGAAGACTTTCTCCAAGTGATTTATTGATAAAGGATTCAGAAGTGTCGGGAAAGCATGCATTAATAAAGTGGAATTTGGATAAGATGAAATGGGAGTTGGTGGATATGGGTAGCCTGAATGGAACACTTTTGAATTCTAAGCCTATCAACCATCCAGACAGTGGAAGTAGGCGTTGGGGAGATCCAATGAATCTTGCTAATGGGGATATTATAACACTTGGAACAACATCAAAAGTAATTGTTCATATTACTTCGCAAAACCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCAATGGCTTTGCGTCGAGGAGGAAAAAAGTCTCCAATGGAAGATGTTTGCTATTTTCAGTGGCCTCTACCTGGGCTGGATCAGTTTGGACTTTTCGGCATTTGTGATGGACATGGTGGAGATGAGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGATAATTGCTAGTATATTATCAGATTCCTTAAAAAGGGAGAGGGTTTTATCACTCTGTGATGCTTCAGATATTCTGCGAGATGCATTTTCTCAAACAGAAGCATGCATGAATCACCATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGATGGTGATGAAAATTTCTTTGCACAATGTGCAAATGTTGGAGACTCTGCCTGTGTTATGAGTGTTGATGGGAAACAAATCAAGATGACAGAAGATCACAAGATAATGAATTATTCTGAGAGACTCAGAATTGAAGGGACAGGCGAACCATTGAAAGATGGGGAAACACGTCTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTCCTGAAAGAGAAGGATTCCCGGTTCAGTTCAGAGCCTTATATAAGTCAAGTTGTGCATATTAATCAAACAAGCAAGGCTTTTGCTGTTCTAGCCAGTGATGGGTTATGGGATGTCATCAGCGTGAAGAAGGCAATTCAGCTAGTGCTCCAGATGAGAGAGAAATATCATACAGAGAGAGAGAATACAGCAGAAAAGATTGCTAGTATGTTGTTGAGTGAGGCTAAAACACTCAGAACAAAGGATAATACCTCTGTAATTTTCTTAGATTTTGATACCTTTGACAGATTCTCTTGTAAAGTTGAATCCTAG 1740 0.4121 MDTMLQTIATVVLLLMLLLILIFLFFLFKPWRFFFSSRFRSSIKGGELERPLVVDENDANVSLNQSNELPRDYDLEGACYPNEAHFRSPRTHGQELVHKQRLQPLSPSPNMPQGDSLVVDVISDPSEDVDVGQTLKLSPAHFAHIQKHSTPNFQYDRLQDFVQRDIFDQRSCLTLEVISGPSRGLRCSVQSTNPSRLPLTLGRLSPSDLLIKDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDSGSRRWGDPMNLANGDIITLGTTSKVIVHITSQNQHHIPFGVGMASDPMALRRGGKKSPMEDVCYFQWPLPGLDQFGLFGICDGHGGDEAAKSASKLFPEIIASILSDSLKRERVLSLCDASDILRDAFSQTEACMNHHYEGCTATVLLVWADGDENFFAQCANVGDSACVMSVDGKQIKMTEDHKIMNYSERLRIEGTGEPLKDGETRLYGINLARMLGDKFLKEKDSRFSSEPYISQVVHINQTSKAFAVLASDGLWDVISVKKAIQLVLQMREKYHTERENTAEKIASMLLSEAKTLRTKDNTSVIFLDFDTFDRFSCKVES* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02423 579 CDD PP2Cc 307 567 IPR001932 -
Rops1g02423 579 SUPERFAMILY SMAD/FHA domain 171 282 IPR008984 GO:0005515
Rops1g02423 579 Gene3D - 303 574 IPR036457 -
Rops1g02423 579 PANTHER PROTEIN PHOSPHATASE 2C 305 564 IPR015655 GO:0004722|GO:0006470
Rops1g02423 579 FunFam Protein phosphatase 2C 70 168 302 - -
Rops1g02423 579 FunFam Protein phosphatase 2C 70 303 574 - -
Rops1g02423 579 Gene3D - 168 302 - -
Rops1g02423 579 Pfam Protein phosphatase 2C 306 560 IPR001932 -
Rops1g02423 579 SUPERFAMILY PP2C-like 308 568 IPR036457 -
Rops1g02423 579 CDD FHA_PP2C70-like 173 283 - -
Rops1g02423 579 ProSiteProfiles Forkhead-associated (FHA) domain profile. 199 250 IPR000253 GO:0005515
Rops1g02423 579 SMART FHA_2 198 250 IPR000253 GO:0005515
Rops1g02423 579 ProSiteProfiles PPM-type phosphatase domain profile. 295 567 IPR001932 -
Rops1g02423 579 SMART PP2C_4 289 565 IPR001932 -
Rops1g02423 579 Pfam FHA domain 200 275 IPR000253 GO:0005515
Rops1g02423 579 ProSitePatterns PPM-type phosphatase domain signature. 332 340 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02423 Rops-Chr1 46880639 46886541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02423 26 569 PP2C-type Phosphatase Gene Family AT5G19280 58.916 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02423 K01090 - gmx:100170643 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02423 1 46880639 46886541 Rops1g02423 1 46880639 46886541 ECH