Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02421 ATGGAGCAGCAAGCACTTATTGGCGCTCTCAACTTGGTCTCTCGCAACCTCCCTCTTCCTCCCGATCTCTTTCGAACCGTTTCTTCTATCTATCACCGATCTGACCACAAACCTCACTCTTCGGGCGATGCAGGGAGTTCTACACAAGAAGATTTACTGACAGACTTTCAAGATTCACTGGTGAAACAACGTCCTAATTGTGGCTCCGTTTTCAAATTAAACAAAGCAATGGAAAGCCGTTATCAGACTCAGATTCGGCACCGCTTAACTGAGCTTGAAGGATTGCCTTCGAGCAAGGGAGAGGACCTGCAGACAAGGTGCCTGCTTGAGTTTTATGGACTAAAGCTAGCAGAGTTGCAGAGGAAGGTTCGGACTGATGTGAGTTCTGAATACTGGCTCAATGTTATTTGTGCATATCCCGACAGACAATTGTTTGATTGGGGCATGATGCGGTTGCGCCGTCCACCATATGGTGTTGGTGATCCATTCTCCGTGGATGCTGATGATCAATTAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGAGCAGGCAAAAAATCAAATAGAGACCAGAAAAAGAAGATTTTTTGCAGAGATACTAAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTAAAGAGGAGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTGACTTTACTTCTTGAAGAAACTAATAAACTGCTTGTTAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTCAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGAAACTGATTTACCACAGTCAGATGCTTCGAAGAGTGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGTAGATTTGATAGATTCTGATCATAATGGTGAGACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAGCCATCTATCCTTCAAGGTGGAGAATTAAGATCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATTTCATTGATAGCATATCTTATGGAACACAAGGGTGTGACTGGTCCTTTCTTGATTGTGGCTCCAAAGGCTGTTCTGCCTAACTGGATAAATGAATTCTCAACATGGGCTCCTAGCATCACAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGAAAATTTAATGTGCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCATTGGCACTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCAGTTATCACATTCAACGAAGACTTCTGTTGACTGGTACTCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCGTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGTTATTAGTCATTCGGCGATTACATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATACCTTCCAGGGAAATCGCAGGTTATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTGGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGTGACTATGATATGTATAAACGAAAGGAGGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAAATGACCCGTCTCATGGATATTCTTGAAATTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCTCCTGACTCTCCATACTTCATGTTTCTCTTGAGCACTCGTGCCGGAGGTCTTGGATTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAAAAAGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATCGATGCTAAAGTCATTCAGGCAGGGCTTTTCAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGGGATTATGCGTAGAGGTACTAGCTCACTCGGGACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCGGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGGCTAAAGGAGAATTACAGGTCTCGTCTCATGGAAGAGCATGAGCTACCAGATTGGGTGTACGCTGAACTAAACAAGGATGATAAGGTCAAAGTTTTTGACAGTGGTAGTGTCACCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATTTACAATGGATGAGGGCTGTGGAGAATGGACAGGACATATCTAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGCACCTCCCTGTAGACAGCCATACACAAGCCAGTGATGACATGGGGGCAAAAGGAAGGTTACTGGAGTTAAGGAATGAAAGTGTTCCCATGACAAATGAGAGATCAAGTGAAGATACTTTCAATGTGACCCCTGCCTCTAAGAGACTTGAGCATGAAGAAATAAATTCCCAGAAACATGAAAATGAGGATACCAGCGTAAGTGGTTTGAATGAGCATATGTTTTCCTGGAATACTCACAGAAAGAAGAGATCAAACTATGTTGGCCAGGGTTCATTATCTGATACTAGAGATCAGAATGCAAATGGAAGAGCAAACTGGAACTGA 3240 0.4194 MEQQALIGALNLVSRNLPLPPDLFRTVSSIYHRSDHKPHSSGDAGSSTQEDLLTDFQDSLVKQRPNCGSVFKLNKAMESRYQTQIRHRLTELEGLPSSKGEDLQTRCLLEFYGLKLAELQRKVRTDVSSEYWLNVICAYPDRQLFDWGMMRLRRPPYGVGDPFSVDADDQLRKKRDAERLSRLEEQAKNQIETRKRRFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSETDLPQSDASKSGISKESPLEEDVDLIDSDHNGETSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPFLIVAPKAVLPNWINEFSTWAPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWHYLIVDEGHRLKNHECALARTLDSGSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLVIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEGIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMEEHELPDWVYAELNKDDKVKVFDSGSVTGKRKRKEVVYADTLSDLQWMRAVENGQDISKLSAKGKRREHLPVDSHTQASDDMGAKGRLLELRNESVPMTNERSSEDTFNVTPASKRLEHEEINSQKHENEDTSVSGLNEHMFSWNTHRKKRSNYVGQGSLSDTRDQNANGRANWN* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02421 1079 MobiDBLite consensus disorder prediction 1052 1079 - -
Rops1g02421 1079 MobiDBLite consensus disorder prediction 320 342 - -
Rops1g02421 1079 MobiDBLite consensus disorder prediction 290 343 - -
Rops1g02421 1079 MobiDBLite consensus disorder prediction 1000 1015 - -
Rops1g02421 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 688 849 IPR001650 -
Rops1g02421 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 599 IPR027417 -
Rops1g02421 1079 MobiDBLite consensus disorder prediction 962 1040 - -
Rops1g02421 1079 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 952 IPR029295 GO:0042393
Rops1g02421 1079 Pfam Helicase conserved C-terminal domain 685 798 IPR001650 -
Rops1g02421 1079 Gene3D - 605 902 IPR027417 -
Rops1g02421 1079 Coils Coil 173 197 - -
Rops1g02421 1079 FunFam Chromatin structure-remodeling complex protein SYD 364 608 - -
Rops1g02421 1079 Pfam SNF2-related domain 376 665 IPR000330 GO:0005524|GO:0140658
Rops1g02421 1079 FunFam Probable ATP-dependent DNA helicase CHR12 605 904 - -
Rops1g02421 1079 SMART helicmild6 714 798 IPR001650 -
Rops1g02421 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 852 IPR027417 -
Rops1g02421 1079 PANTHER SNF2/RAD54 HELICASE FAMILY 167 1019 - -
Rops1g02421 1079 CDD SF2_C_SNF 674 809 - -
Rops1g02421 1079 SMART ultradead3 369 563 IPR014001 -
Rops1g02421 1079 SMART SnAC_2 891 952 IPR029295 GO:0042393
Rops1g02421 1079 MobiDBLite consensus disorder prediction 963 979 - -
Rops1g02421 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 552 IPR014001 -
Rops1g02421 1079 Gene3D - 341 598 IPR038718 -
Rops1g02421 1079 MobiDBLite consensus disorder prediction 1016 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02421 Rops-Chr1 46871143 46878918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02421 681 826 RAD5 or RAD16-like Gene Family AT5G43530 38.000 1.65e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops1g02421 SNF2_N 1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02421 - - gmx:100775993 1900.95