Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02418 ATGCAATCTTCCTCGGTGGCAAGTAAGCAACCATGCACCATTACGTGGAAGTCTAAGGAGATCTTAAATGAGTTTCAATGGCGACAACGAAGGTTTTCATCAGAAATTAGGCTTGCGAGTGAACTGGTCAAAACCCAGCTGAAATTAGGCTTGCAGCAGACTAACAGGACACACAGGCTCACAGCAATGTTGACCAAGCACGGAATTGGACATACTCATACATATTCATTTTTACCTTGCATGCTTGAAATGGCTTCCCCAGAAGGCACCAACAAGAACAAGGAGATAGTCTCACAGGTTCCTGGTTACATATATGTGTACAGTGATGGCACCATTGAACGTCCCGACAGCTACCCAATAGTTCCACCATCACCGGAGGACCCTGCAACTGGTGTCTCATCCAAAGACATTGTCTTCTCAGAGGACCCTTATCTCGCTGCTCGACTTTTCCTTCCAAAACTAACCCAATCCAATGAGAACCAAAAACTCTCCATCTTGGTCTACTTTCATGGCGGTGCATTTTGCTATGAATCATGCTTTGCAATCCACCACTCCAAATACTGCAACTTATTAGCTTCTCAAGCAAACGTTGTAATTGTCGCCATAGAGCACAGAAAAGCTCCGGAACATTATCTCCCAACTGCTTATAATGATTGCTGGGATGGTCTCTATTGGGTTGCCTCTCATACCACCCAGAACCCCACCAACCCTGACCCTTGGCTCACCAATCATGGTGATTTCAACAAAATTTTCATTGGGGGTGACAGCAGCGGTGCAAATATTGTTCATAACGTTGCCATGCGTGCTGGGGTTGAAGCTCTACCTGGTGGTGTTAAACTATATGGTGCTTATCTTAACCATCCTTACTTCTGGGGTGCAAAGCCAATGGGGAATGAACCTGTTATAGGGTTCGAGGAGACCAATCAGAGTCTGATTTGGAACTTCGCGTACCCTTCTGCACCTGGTGGGTTGGATAACCCAATGATCAATCCATTGGCTCCTGGGGCACCTAGCTTGGCCACACTTGGTTGTGCTAAGATGCTTGTTACTGTGGCTGGCAAGGATCACCTTCACTTTAGGGATAGAGCAGTAAGGTATTATGAGGCTGTGAAGAGCAGTGGGTGGAAAGGGGAAGTGGAGCTGTTTGAAGAGGAAGGAGAGGATCATGTTTATTACATGTACGATCCTGAAACTGAGCAAGCCAAAATATTGATGAAGGTCGTGGTTGATTTTCTGCGCCAGTGA 1245 0.4618 MQSSSVASKQPCTITWKSKEILNEFQWRQRRFSSEIRLASELVKTQLKLGLQQTNRTHRLTAMLTKHGIGHTHTYSFLPCMLEMASPEGTNKNKEIVSQVPGYIYVYSDGTIERPDSYPIVPPSPEDPATGVSSKDIVFSEDPYLAARLFLPKLTQSNENQKLSILVYFHGGAFCYESCFAIHHSKYCNLLASQANVVIVAIEHRKAPEHYLPTAYNDCWDGLYWVASHTTQNPTNPDPWLTNHGDFNKIFIGGDSSGANIVHNVAMRAGVEALPGGVKLYGAYLNHPYFWGAKPMGNEPVIGFEETNQSLIWNFAYPSAPGGLDNPMINPLAPGAPSLATLGCAKMLVTVAGKDHLHFRDRAVRYYEAVKSSGWKGEVELFEEEGEDHVYYMYDPETEQAKILMKVVVDFLRQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02418 414 PANTHER ARYLACETAMIDE DEACETYLASE 98 398 - -
Rops1g02418 414 Pfam alpha/beta hydrolase fold 166 392 IPR013094 GO:0016787
Rops1g02418 414 Gene3D alpha/beta hydrolase 108 414 IPR029058 -
Rops1g02418 414 SUPERFAMILY alpha/beta-Hydrolases 106 414 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02418 Rops-Chr1 46836418 46839351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02418 93 413 Carbohydrate Esterase AT3G48700 36.667 3.52e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02418 - K13258 gmx:100814777 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02418 1 46836418 46839351 Rops1g02418 1 46836418 46839351 ECH
Rops6g02952 6 52351805 52353119 Rops1g02418 1 46836418 46839351 PCT