Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02417 ATGGAAGTTCAGAGGCGGCCAGATCAGTGCCTCCCGGAGAGGAAAGGACAGAAGAGGAAGCTGGAAGAGGAATTTGAAGAAGACCAACAGATCTCCGTCTCTCTCACCGGAGACGCTCTTCTCTCCGACGTCAAGGAACAGGTTTCCATCTTAGATTCCACTTTCTCGTGGAACGAATCCAATCGAGCTGCCGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCCAAAAATGAGGAAGTTGTGAATGTGATTGTGGAAGGAGGCGCGATTCCTGCTTTGGTTAAGCATCTTCAAGCGCCTCCTTTGGATGAAAACGAACGTGTCCAGAAGTCATTGCCGTTTGAGCACGAGGTTGAGAAAGGGAGTGCTTTCGCACTTGGACTTCTTGCCATCAAGCCAGAACATCAACAGCTCATTGTTGACAGTGGTGCCTTAAAACACCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATCCGAAGGGCTGCAGATGCGATCACTAATCTTGCTCATGAGAACAGCAATATTAAAACCCGAGTCAGGATGGAAGGGGGGATTCCACCACTTGTTCATTTGCTTGAATTCGCGGATACAAAGGTGCAAAGAGCAGCCGCTGGTGCTTTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACGCTGATTCTAATGCTTCGATCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTTGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGATTACTTAGCTCTTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGTCAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTACGACCTTTGATAGAGATGCTTCAGTCCCCCGATGTTCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGATACGCATAACCAAGCTGGTATTGCACACAATGGTGGTTTGATGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGCCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGTGTGCTGAATCATCTGTTATATCTTATGCGAGTTTCAGAAAAGGCTTTCCAAAAACGAGTTGCTTTGGCTCTTGCTCATCTCTGTTCTGCAGATGATCAGAGAAAAATATTTATTGATCACCATGGTTTAGAGTTGCTTATTGGGCTTCTTGGCTCATCCAGCCCCAAACAGCAACTTGATGGAGCCGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGACTCTGTCTCCCGTAGATGCTGCTCCCCTTTCTCCAACACCCCAGGTCTATTTAGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATATACTGGATCGGTTGATGTCACTCTTGATGTTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTATTAGAAGGGCTGAAGAGACTCTGCGAATACACGATTGCACAGGATATATCACTGGAGAACGTTTCAAGTATGTATGAACTTTCGGAAGCCTTTAATGCTATATCATTAAGGCACACATGCATCCTTTTTATCTTGGAGCAGTTTGATAAATTGAGTGCAAGGCCCGGACTCGCTCATCTGATTCAGCGAATAATACCGGAGATCCGCAATTATTTTGCTAAAGCTCTTACAAAGGCCAATTCCAACATCCAGGCATAG 2112 0.4446 MEVQRRPDQCLPERKGQKRKLEEEFEEDQQISVSLTGDALLSDVKEQVSILDSTFSWNESNRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLDENERVQKSLPFEHEVEKGSAFALGLLAIKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSNIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVPDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQKRVALALAHLCSADDQRKIFIDHHGLELLIGLLGSSSPKQQLDGAVALCKLANKAMTLSPVDAAPLSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDVAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFDKLSARPGLAHLIQRIIPEIRNYFAKALTKANSNIQA* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02417 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 145 IPR000225 GO:0005515
Rops1g02417 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 IPR044282 -
Rops1g02417 703 SUPERFAMILY POZ domain 529 631 IPR011333 -
Rops1g02417 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515
Rops1g02417 703 MobiDBLite consensus disorder prediction 1 27 - -
Rops1g02417 703 SUPERFAMILY ARM repeat 59 409 IPR016024 -
Rops1g02417 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 362 IPR000225 GO:0005515
Rops1g02417 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 267 307 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 133 181 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 225 265 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 78 132 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 183 223 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 465 505 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 350 390 IPR000225 GO:0005515
Rops1g02417 703 SMART arm_5 309 349 IPR000225 GO:0005515
Rops1g02417 703 FunFam Armadillo/beta-catenin repeat family protein 528 672 - -
Rops1g02417 703 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Rops1g02417 703 CDD BTB_POZ_ARIA_plant 524 639 - -
Rops1g02417 703 Gene3D - 411 520 IPR011989 -
Rops1g02417 703 SUPERFAMILY ARM repeat 435 614 IPR016024 -
Rops1g02417 703 Gene3D - 39 348 IPR011989 -
Rops1g02417 703 SMART BTB_4 537 634 IPR000210 GO:0005515
Rops1g02417 703 Gene3D Potassium Channel Kv1.1; Chain A 526 663 IPR011333 -
Rops1g02417 703 Gene3D - 349 410 IPR011989 -
Rops1g02417 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Rops1g02417 703 Pfam Armadillo/beta-catenin-like repeat 309 348 IPR000225 GO:0005515
Rops1g02417 703 Pfam Armadillo/beta-catenin-like repeat 190 222 IPR000225 GO:0005515
Rops1g02417 703 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Rops1g02417 703 ProSiteProfiles BTB domain profile. 537 604 IPR000210 GO:0005515
Rops1g02417 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02417 Rops-Chr1 46826928 46834609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02417 293 407 U-box Gene Family AT3G46510 30.769 4.03e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops1g02417 BTB 4.6e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02417 - - gmx:100819832 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02417 1 46826928 46834609 Rops1g02417 1 46826928 46834609 ECH
Rops1g02417 1 46826928 46834609 Rops6g02944 6 52295319 52309292 PCT