Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02413 ATGCTGTCGAATCATCTCCAAAACGGCATCGAAACGGCGAGGCTCGTTTGGTCGCGGATTCCTAATTCGGATGATTCACAGTTTCACGACGACGGTGGCGTTGGCCTTTTGAAGAAGAACGATGGAAGTGGCGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGTGAACAACAGGCGCGAAGAGGGAAGCTGTATGTGAGTTATTTGCTGGTGGTGAAATGGTTCATTGCCTTGCTCATTGGCATTTGTACTGGACTTGCTGCTGTTATCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCAATGACATTTAATATAATTCAGAAATCTTATGTCGCTGGCTTTGTCATATATGTCCTGATCAACTTGGTTTTGGTATATTCCTCTGTCTATATTGTCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGCTACTTAAATGGCGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTCCATACCGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGAACTACCAAGTATCATCTAAATTCAAGGTGGTTTCATGTATTCAAAAGTGACCGGGATCGCCGTGATCTTGTAACCTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACTTCTGCTATAGTGGCTGTTGTGGTGCGAACTGTGATGGGGTGGTGCAAGAGTGGAAAATGTGGACATTTTGGGTCAGGTGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCGTTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACAGAGTCAAGATTGTTGAAGCATGCCTTGTCTCTGTTTTAACATCAGTCATTTCATTTGGCTTGCCACTTCTAAGAAAATGCAGTCCATGCCCTGAATCTGATCCTACATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTAAATTTCTTTTGTAGCAAAGACAAGGAATACAATGATCTTGCTACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGCTCCCAAAGTTTATTAACCTTTCTGGTTATGTTTTATGCTTTGGCGGTTGTCACATTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATTGAAGAGGGAACGTATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTGTGTGTCATTATGGTTGAAATCACAAATAACTTAAAACTTTTACCCCTTATTATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGAGGGCTTCTATGAGGAGCAGGCTCGATTGAGGGGCATTCCATTACTGGAATCAAGGCCCAAGTATGAGATGCGGAATATGACAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCTCGCGTTGTTAAGGTTTCAGATGTAGTTTCCATTCTACAGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGATCCACTTGTTATTGGATTAGTGCTTCGGAGTCATTTGTTGGTAATTCTGCAGTCAAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAGGTGGGGGAAGTTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGACTATGTCTTGATGATATACATCTAAGTTCAGAAGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCACCCTATATTGTACCAGAAGATATGTCTTTGACAAAGGTATACAATCTCTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTCCCTCGTCCGTCACGTGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGAAACCGAAAATGTGAATACATTAGAGCTTCAGACAACTAGTGTAAGAACTCCACATCAGAATAGAAGATCGACCACGAGGAATGCAGATGTGGAGCGCCCTCTGCTAAATGGTCTTCTGGTTTAG 2394 0.4181 MLSNHLQNGIETARLVWSRIPNSDDSQFHDDGGVGLLKKNDGSGVESLDYEVIENFAYREQQARRGKLYVSYLLVVKWFIALLIGICTGLAAVIINISVENFAGWKFSMTFNIIQKSYVAGFVIYVLINLVLVYSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGTTKYHLNSRWFHVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTVMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIVEACLVSVLTSVISFGLPLLRKCSPCPESDPTSGIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGFYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILQSNKHNGFPVIDHTRSGDPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGSSIRHDSGEFAKPVSSKGLCLDDIHLSSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEETENVNTLELQTTSVRTPHQNRRSTTRNADVERPLLNGLLV* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02413 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 754 - -
Rops1g02413 797 ProSiteProfiles CBS domain profile. 707 764 IPR000644 -
Rops1g02413 797 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Rops1g02413 797 Pfam Voltage gated chloride channel 135 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 SMART cbs_1 710 758 IPR000644 -
Rops1g02413 797 SMART cbs_1 596 648 IPR000644 -
Rops1g02413 797 SUPERFAMILY Clc chloride channel 55 577 IPR014743 -
Rops1g02413 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 40 759 - -
Rops1g02413 797 Gene3D - 596 760 IPR046342 -
Rops1g02413 797 FunFam Chloride channel protein 699 790 - -
Rops1g02413 797 FunFam Chloride channel ClC3 69 386 - -
Rops1g02413 797 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops1g02413 797 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops1g02413 797 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops1g02413 797 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops1g02413 797 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops1g02413 797 CDD ClC_6_like 46 575 - -
Rops1g02413 797 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops1g02413 797 Pfam CBS domain 708 754 IPR000644 -
Rops1g02413 797 Gene3D Clc chloride channel 70 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02413 Rops-Chr1 46732045 46745884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02413 1 773 Ion Channels AT5G26240 83.312 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02413 K05016 - gmx:100811908 1463.74