Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02406 ATGTCTTTAGCTATGTTTCTTCCATGCATTCTTGCATTAGTTTCATCTCTGAATGGCTTATATGCCCAGAATTCTTCCTCAGCCATAGAGTTAAATTCAAACATCACTGCTGGATCAAATTCTACTTGGAAGTCTCCCTCTGGAGATTTCGAATTTGGATTCTACCGTGTTTCCAAAGGTCTCTTTCTTGTTGGAATATGGTATGGGAAAATCCCAGAGAGAACACTGGTTTGGTACGTGAGTCCCCCTGTGGAAGCAAATTCCTTAATCCAACTCACTTCTGGAGGACACCTTGTGGTAACATATCCAAATGGAAGCACTGCTCGGACCATAGATGATGGAGGAAACAGTGCAAGTTCTGCCTTCATGCAAGATAATGGCAATTTTGTTTTGAGAGACTCTAACTTGAGAGCTGTGTGGGAGAGTTTCAATTTTCCAGCTAACACAATGTTGCCAGGGCAAACCTTGAAAAGTACTCAAATCCTCTATTCCAAAGGGAAAGGAGCTTCAAACTACTCAAATGGGAATTTCATGTTGCAAATGCAGGGAGATGGGAACTTGTTGCTCAAAGCGTATCAATGGTCAGATCCTGCATATTGGTACACTTCAACATTAGTCTCAGGTTTGAGTTTGGTGTTTAATGAATCTAGTGCTTCCCTGTATCTTGTCAGTGACACTGGGAACATTACCAAAGTAATAACCAACAGCACTCCAACCCCAGTAAAGGATTACTATCATCGCGCTACAATAGATGAAAATGGCAATTTCCATCAATATGCATATCACAAAAGAAATGGCACCAGGTGGACCAGGGTTTGGAGTGCTTTAGATGATCCTTGCATAGTAGATGCCATTTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAGTGAAGTGTGATTGTATTCCAGGTTACATCCCATTGGATCAAGAAGATGTGTCCAGAGGGTGTCGCCCAGATGCTGTAATCAATTATTGTGTGGGACCTTCTATGATGAACTTCAAGCTGCAGGAGTTTGATGACACAGATTTCCAATCTACTATAGATTTTGCTACAATAAGTAATGTTAATTTGGATGGTTGTAAGAGGTCTGTAATGGATGATTGTAATATCATTGCTGCAACTTTTAATGCTTCAGCATTAACATGCACCAAGAAGAGAATGCCATTGCTGAATGCCAGAAAGAGTTCATCTTCAAAGGGAAAGAAAGCACTTCTTAAAGTTCCTAACAGTGATGAGTCTAGCACATCTAAAGTTTCCAAGAAGAAGAATTTTAATGTAAGAGTTTTTTTGAAGGTTATGGTTGCAGTTAGTGCCACTCTTGCCTGCTTATTTGGAGCCCTTGCTGTCTACTATCATCCTTTGGCTCAAAGACTGAATAAAAGAAAGAAGTCTCTGAATGCAACAGCTATTGGAATCAACTTCAGAAAATTCACATTCCAGGAGCTGCATGAAGCAACAGATGGATTCAGTAAGATTCTTGGTAAGGGATCTTCAGGGAAAGTCTACCGTGGTACTTTAATAATAGATGATGCGGAAATTGGTATTGCAGTGAAGAAGCTGGAAAAGATGATGGAGAAAAGTGAAAATGAATTCATGACTGAGCTCAAAATTATTGGCCGTACCCATCACAAGAATTTGGGAGAAAGACCTCAATGGGGTCAGAGGGCTGAAATGGCTCTTGGAATTGCAAGAGGCTTACTGTACTTGCATGACGAGTGTGAAACCCAGATCATACATTGTGATATCAAGCCCCAGAATGTGTTACTTGATGCCAATCACACAGCAAAGATTGCAGATTTTGGGCTTTCAAAGCTTTTGAACAGAGACCAAACTAGAACAACCACCAATTTTAGAGGGACAGTGGGGTATATAGCACCTGAATGGCTAAGGAGTGCACCAATAACTGCCAAAGTTGACATATTCAGCTTTGGGGTTATGTTACTAGAGATTATTTGCTGCAGGAGGCACGTTGAGTCGGCTCAGGATGAAATAGGAAGTGAAGATAATGATTTGGTTCTTTCAAATTGGGTTTTAAGGTGTATGGTGTCTAGGAAACTTGAACTAGTGGTGAGGCATGACTCAGAAGTACTCAGTGATTTCAAGAGGTTTGAGCAAATGGCCTTGGTTGGATTATGGTGTGTTCATCCAAACCCAGCTCTTAGACCTTCAATGAAGCAAGTGACACAAATGCTAGAGGGAACCGTGGAAGTTGGAGTTCCACCCTTGCTTTATGATCAGATGATGGCAGATCAGAGCTTATAG 2274 0.4112 MSLAMFLPCILALVSSLNGLYAQNSSSAIELNSNITAGSNSTWKSPSGDFEFGFYRVSKGLFLVGIWYGKIPERTLVWYVSPPVEANSLIQLTSGGHLVVTYPNGSTARTIDDGGNSASSAFMQDNGNFVLRDSNLRAVWESFNFPANTMLPGQTLKSTQILYSKGKGASNYSNGNFMLQMQGDGNLLLKAYQWSDPAYWYTSTLVSGLSLVFNESSASLYLVSDTGNITKVITNSTPTPVKDYYHRATIDENGNFHQYAYHKRNGTRWTRVWSALDDPCIVDAICGVYGLCTSPDNESVKCDCIPGYIPLDQEDVSRGCRPDAVINYCVGPSMMNFKLQEFDDTDFQSTIDFATISNVNLDGCKRSVMDDCNIIAATFNASALTCTKKRMPLLNARKSSSSKGKKALLKVPNSDESSTSKVSKKKNFNVRVFLKVMVAVSATLACLFGALAVYYHPLAQRLNKRKKSLNATAIGINFRKFTFQELHEATDGFSKILGKGSSGKVYRGTLIIDDAEIGIAVKKLEKMMEKSENEFMTELKIIGRTHHKNLGERPQWGQRAEMALGIARGLLYLHDECETQIIHCDIKPQNVLLDANHTAKIADFGLSKLLNRDQTRTTTNFRGTVGYIAPEWLRSAPITAKVDIFSFGVMLLEIICCRRHVESAQDEIGSEDNDLVLSNWVLRCMVSRKLELVVRHDSEVLSDFKRFEQMALVGLWCVHPNPALRPSMKQVTQMLEGTVEVGVPPLLYDQMMADQSL* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02406 757 ProSiteProfiles Bulb-type lectin domain profile. 28 144 IPR001480 -
Rops1g02406 757 Gene3D - 21 145 IPR036426 -
Rops1g02406 757 PIRSF SRK 551 756 IPR024171 GO:0004674
Rops1g02406 757 PIRSF SRK 1 552 IPR024171 GO:0004674
Rops1g02406 757 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 550 - -
Rops1g02406 757 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 204 IPR036426 -
Rops1g02406 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Rops1g02406 757 Gene3D - 146 279 - -
Rops1g02406 757 Pfam Protein kinase domain 560 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02406 757 Pfam Protein tyrosine and serine/threonine kinase 494 550 IPR001245 GO:0004672|GO:0006468
Rops1g02406 757 MobiDBLite consensus disorder prediction 398 420 - -
Rops1g02406 757 ProSiteProfiles Protein kinase domain profile. 491 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02406 757 Pfam S-locus glycoprotein domain 242 310 IPR000858 GO:0048544
Rops1g02406 757 SMART blect_4 34 146 IPR001480 -
Rops1g02406 757 Gene3D Phosphorylase Kinase; domain 1 463 547 - -
Rops1g02406 757 CDD B_lectin 38 146 IPR001480 -
Rops1g02406 757 SMART serkin_6 491 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02406 757 Gene3D Transferase(Phosphotransferase) domain 1 548 744 - -
Rops1g02406 757 Pfam D-mannose binding lectin 83 159 IPR001480 -
Rops1g02406 757 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 543 743 - -
Rops1g02406 757 ProSitePatterns Protein kinases ATP-binding region signature. 497 523 IPR017441 GO:0005524
Rops1g02406 757 SUPERFAMILY Protein kinase-like (PK-like) 478 743 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02406 Rops-Chr1 46566410 46569108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02406 480 745 Receptor kinase-like Gene Family AT5G20050 36.013 6.18e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops1g02406 Pkinase 7.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02406 - - lang:109330973 1166.37