Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02405 ATGACTCTACCTAGTGCCACTAAATTCCTTGTACGCTTTGTTGCGTTGCTTCTGTTCCTCCTATGCTTCCATGTTCCAAGGAAGGCTAACTCAATTGAACTGGGTACCAGCATTGTGGCTGGCACTAACTCATCTTGGCAATCATCCTCAGGTGATTATGCCTTTGGTTTCTACCACCTTCTTAGCGGTCGCTATCTTGTTGGAATTTGGTTTGACAAGATTCCACAAAAAACTCTAGTTTGGTCTGCAAACCGTGATGATCCAGTTGAAATCGGATCAATCATCAATCTTACACTAAGTGGCCAATTTGTGGTCCAACATGTCAATGGGACTTGGTTCCCAATCTACAATGGAACAGACACAGCTTCTGCTGTGATTCAGGATGATGGAAATTTCATCTTGAGGGATTCAGTTTCCAACATTATCTGGCAGAGCTTTGATTCACCCACAGATACTCTTCTATTAGGCCAAACTTTGGATATGAATAGGATGCTCTACTCCAATGCCAATGGAAATGTAGACTACTCAACTGGGCAATACAGATTGGAGATCCAAAAACTTGATGGCAACATTGTTCTCAAAGCCTATAGGTTCCCAGAAGATGCTTACTGGTGGAGTGGAACTGTCCACAACACAGATGTGAGAATTATTTTTGACAACACAACAGCTTTTCTTTATGCTGTCAATGGCACCCAAAATATATATAATCTGACAACTCAAGTGATGAATCCAATCCAAGATTACTACTATCGTGTAGTGATTGATGACCAAGGAAACCTTCAGCAGTGGATTTACCATAAAGAAAATGGAAGTCTGTGGACATCTAATTGGAAGGCCGTAACACAGCCCTGCATAGTCCCTGCCGTTTGTGGGGTATATAGCCTTTGCAGTTCACCTGTTAATGGGACATTCAATTGTGAATGCTTGCCTGGCTATATACCTTTGGATCCAAGTGTTCCCTCCAAAGGGTGCTTTCCCAGTGTGGTGAGGAACTTATGTGCTGCAAATTCCTCTGATGCAGACTTTACAGAGGAAGTGGAACCAATTCAAGATGCTGATATGCCAAAAGGGAATTTTGGGAGTTTATCTGATCTACAATCCATATCCAATTCTGATTTGGAAAATTGCAAGAGGGAAGTGATGAATGACTGTTTCTGCATGGCTGCTGTTTTTGATGGCACTAATTGTATTAAGAAAAGGACGCCTATTATAAGTGCAAGAACAGGCATCCCTGACACCAGCAATCATGTGTTACTTGTCAAAGTTCCTCAGGTCCATATACAAGATGAAAAGGATTCACCATCTTGGGTTGTTTTGCTAGTGGCTCTCATCTCTTGCTCCCTACTTGCTGTTGTGTTTGCAGCTACTGCCATTTATCATCACCCCGTTCATGGGTATCTCATACACAAAAAGGCACCTCCAAAGCCAAAGCCTGTGGATGTGGATATCAATGTAAGAGCATTCTCATACCAACAGCTGAGGGAAGCAACAGATAGATTCAAGGACAAACTTGGCCGAGGTTCCTTTGGTACAGTCTATAGTGGGGTTTTAACAATTGAAGGTGAACAGGTTGAGGTTGCTGTCAAACAACTGGAGAAAGTAGAAGAACAAGGTGAGAAAGAATTTGTGACGGAAGTTCAAGTAATTGCTCTGACTCATCATAGAAATCTTGTAAGGTTATTGGGATTTTGCAATGAGAAGAATCACCGGCTTCTGGTTTATGAGAAAATGAAAAATGGGACACTGTTCAAGTTCCTTTTTGGTGAAGGGGAGTGTGACCGCCAAATCATCCATTGTGACATAAAGCCACAGAATGTTCTTCTTGACTCAAATTATACTGCAAAAATTGCAGATTTTGGTGTAGCAAAGCTATTAAAGAAAGATGGAACTCGAACAAGCACTGATGCTAGAGGGACAATGGGATATATGGCACCAGAATGGCTCAAGAATGCACCTGTTACTACAAAGGTGGATGTCTATAGCTTTGGTGTCATGTTATTGGAAATAATATTTTGTAGAAGGCACATTGAATTCCAACAAATTAAGGATGGAATAGCTGGTGATGAAATGATGCTCATAGATTGGGTTCTAAATTTGGCAAAAGAAAAGAGTTTAAGAGCCGCGGTGATTCATGATGTTGAAGTTGCTAGTGATTTCGAGAGGTTTGAAAGAATGGCAATGGTGGGATTATGGTGCATAAGTCCTGACCCAACTCTTCGACCATCTATCAAAAGTGTGATACAGATGATGGAAGGAATTATAGAAGTTGGTGTTCCACCACTAAACTAA 2289 0.4128 MTLPSATKFLVRFVALLLFLLCFHVPRKANSIELGTSIVAGTNSSWQSSSGDYAFGFYHLLSGRYLVGIWFDKIPQKTLVWSANRDDPVEIGSIINLTLSGQFVVQHVNGTWFPIYNGTDTASAVIQDDGNFILRDSVSNIIWQSFDSPTDTLLLGQTLDMNRMLYSNANGNVDYSTGQYRLEIQKLDGNIVLKAYRFPEDAYWWSGTVHNTDVRIIFDNTTAFLYAVNGTQNIYNLTTQVMNPIQDYYYRVVIDDQGNLQQWIYHKENGSLWTSNWKAVTQPCIVPAVCGVYSLCSSPVNGTFNCECLPGYIPLDPSVPSKGCFPSVVRNLCAANSSDADFTEEVEPIQDADMPKGNFGSLSDLQSISNSDLENCKREVMNDCFCMAAVFDGTNCIKKRTPIISARTGIPDTSNHVLLVKVPQVHIQDEKDSPSWVVLLVALISCSLLAVVFAATAIYHHPVHGYLIHKKAPPKPKPVDVDINVRAFSYQQLREATDRFKDKLGRGSFGTVYSGVLTIEGEQVEVAVKQLEKVEEQGEKEFVTEVQVIALTHHRNLVRLLGFCNEKNHRLLVYEKMKNGTLFKFLFGEGECDRQIIHCDIKPQNVLLDSNYTAKIADFGVAKLLKKDGTRTSTDARGTMGYMAPEWLKNAPVTTKVDVYSFGVMLLEIIFCRRHIEFQQIKDGIAGDEMMLIDWVLNLAKEKSLRAAVIHDVEVASDFERFERMAMVGLWCISPDPTLRPSIKSVIQMMEGIIEVGVPPLN* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02405 762 SUPERFAMILY Protein kinase-like (PK-like) 483 755 IPR011009 -
Rops1g02405 762 ProSiteProfiles Protein kinase domain profile. 498 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02405 762 Gene3D Transferase(Phosphotransferase) domain 1 577 755 - -
Rops1g02405 762 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 760 - -
Rops1g02405 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Rops1g02405 762 SMART blect_4 37 149 IPR001480 -
Rops1g02405 762 Pfam Protein tyrosine and serine/threonine kinase 500 586 IPR001245 GO:0004672|GO:0006468
Rops1g02405 762 ProSitePatterns Protein kinases ATP-binding region signature. 504 529 IPR017441 GO:0005524
Rops1g02405 762 FunFam S-receptor-like serine/threonine-protein kinase 470 576 - -
Rops1g02405 762 Pfam Protein kinase domain 594 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02405 762 SMART serkin_6 498 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02405 762 Gene3D Phosphorylase Kinase; domain 1 475 575 - -
Rops1g02405 762 PIRSF SRK 2 591 IPR024171 GO:0004674
Rops1g02405 762 PIRSF SRK 589 762 IPR024171 GO:0004674
Rops1g02405 762 Pfam S-locus glycoprotein domain 245 314 IPR000858 GO:0048544
Rops1g02405 762 Gene3D - 24 148 IPR036426 -
Rops1g02405 762 Pfam D-mannose binding lectin 78 164 IPR001480 -
Rops1g02405 762 CDD B_lectin 41 149 IPR001480 -
Rops1g02405 762 ProSiteProfiles Bulb-type lectin domain profile. 29 147 IPR001480 -
Rops1g02405 762 Gene3D - 149 288 - -
Rops1g02405 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 209 IPR036426 -
Rops1g02405 762 FunFam Putative receptor-like protein kinase 577 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02405 Rops-Chr1 46561599 46563991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02405 486 761 Receptor kinase-like Gene Family AT5G03140 38.689 2.23e-57 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops1g02405 Pkinase 6.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02405 - - pvu:PHAVU_002G046100g 1045.42