Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02403 ATGGATCCCACACGCAATATCTTCTGTTCTGCTGGTTCTCTTTCTTTGTACTCTCTGAAATCCTCACTCACTCCATTTCTTGTTCCACATTGTGCTACGCTACTCAGGATGGTAGAACCTGCATATACTGTGGCATCTGATAGTGAAACTACTGGAGAGGAAAAGTCATCTACTTTTCAGGAAATAGCAATTGGAATTGATATTGGTACATCACAATGCAGTGTTGCTGTGTGGAACGGTTCCCAAGTGGAGCTTCTTAAGAACATGAGAAATCAGAAGATTATGAGATCATATGTAACTTTCAAAGATGACATCCCTTCTGGTGGAGTTAGTAGTCAATTCTCCCAAGAGCACGAGATGCTGTCTGGAGCCACAATTTTCAACATGAAACGCTTGATTGGCAGAGTTGATACTGATCCAGTTGTCCATGCAAGTAAAAATCTCCCATTTCTGGTGCAGACCTTGGACATTGGAGTTCGCCCATTTGTTGCTGCATTGGTGAACAATATGTGGAGATCCACCACTCCAGAAGAAGTCCTAGCAATATTTCTGGTGGAATTGAGACTAATGGCTGAAACTCGGCTGAAACAACCCATAAGAAATGTAGTTCTTACTGTTCCAGTTTCATTCAGTCGATTCCAGCTAACCAGGATTGAGCGTGCTTGTGCAATGGCTGGCCTTCATGTTCTCAGGCTGATGCCTGAACCAACAGCAGTAGCTTTGTTATATGCTCAACAACAACAGCAGGCTTCTCATGAGAATATGGGTAGTGGAAGTGAGAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTATTGTGACGTTGCAGTGACTGCTACGGCAGGAGGAGTATCACAGATAAAAGCCCTGGCAGGGAGTACCATTGGTGGGGAAGACCTGCTTCAGAATATGATGTGTCATCTTTTACCAGATTTTGAAAATATATTCAAAAACCACGGGGTAAAAGAAATTAAATCAATGGGCTTGCTTCGAGTTGCAACCCAGGATGCAATTCACCGGCTTTCCTTTGAGACCAGTGTTCAAGTTGAAGTAGACTTGGGAGATGGTTTGAAGATATGCAAGGTTGTTGAAGGGGAGGAGTTTGAGGAGGTAAATAGAAAGGTGTTTGAGAAGTGTGAAAGCCTTATCATCCAGTGTTTACAAGATGCAAAGGTAGAAGTTGAAGATGTAAATGATGTAATAATTGTAGGTGGATGCTCTTATATCCCAAAGGTGAAGAATCTTGTTACTAACATTTGTAAAGGAAAAGAACTTTACAAAGGTATGAACCCTTTGGAAGCTGCTGTTTGTGGTGCAGCTGTGGAGGGAGCTGTTGCATCAGGCATCAACGATCCCTTTGGGAACTTGGACTTGTTAACTATTCAAGCCACACCTCTTGCCATTGGAATTCAAGCTGATGGGAACAACTTTGTCCCTGTTATACTGAGGAACACCACAATGCCTGCGAGGAAGGAGCTTATTTTCACAACTATACATGATAATCAAACTGAGGCATTGATCCTTGTCTATGAAGGTGAGGGAAAGAAGGCTGAAGAAAATCACTTGTTAGGATATTTCAAGATAATGGGAATACCTGCAGCACCAAAAGGAGTTCCAGAAATCAATGTGTGCATGGACATAGACGCGGCAAACGTGCTGAGAGTTTTAGCTGGTGTTGTGATGCCTGGATCTCGCCAACCTGCAATTCCTGTTATGGAAGTGAGGATGCCAATGGTAGATGATGGGCATGGATGGTGTGCTGAGGCCTTAAATAGAACCTATGGTGCTACACTGGATTTGGTTACTGTCCAGAAGAAGGCATGA 1824 0.4298 MDPTRNIFCSAGSLSLYSLKSSLTPFLVPHCATLLRMVEPAYTVASDSETTGEEKSSTFQEIAIGIDIGTSQCSVAVWNGSQVELLKNMRNQKIMRSYVTFKDDIPSGGVSSQFSQEHEMLSGATIFNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVRPFVAALVNNMWRSTTPEEVLAIFLVELRLMAETRLKQPIRNVVLTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQASHENMGSGSEKIALIFNMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLLQNMMCHLLPDFENIFKNHGVKEIKSMGLLRVATQDAIHRLSFETSVQVEVDLGDGLKICKVVEGEEFEEVNRKVFEKCESLIIQCLQDAKVEVEDVNDVIIVGGCSYIPKVKNLVTNICKGKELYKGMNPLEAAVCGAAVEGAVASGINDPFGNLDLLTIQATPLAIGIQADGNNFVPVILRNTTMPARKELIFTTIHDNQTEALILVYEGEGKKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAANVLRVLAGVVMPGSRQPAIPVMEVRMPMVDDGHGWCAEALNRTYGATLDLVTVQKKA* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02403 607 Gene3D - 248 426 - -
Rops1g02403 607 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 454 569 IPR029047 -
Rops1g02403 607 Pfam Hsp70 protein 63 558 IPR013126 GO:0005524|GO:0140662
Rops1g02403 607 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 459 565 IPR029047 -
Rops1g02403 607 Gene3D - 64 444 - -
Rops1g02403 607 FunFam Heat shock 70 kDa protein 8 297 378 - -
Rops1g02403 607 SUPERFAMILY Actin-like ATPase domain 62 245 IPR043129 -
Rops1g02403 607 Gene3D - 127 182 - -
Rops1g02403 607 SUPERFAMILY Actin-like ATPase domain 260 445 IPR043129 -
Rops1g02403 607 PANTHER HEAT SHOCK PROTEIN 70KDA 63 557 IPR013126 GO:0005524|GO:0140662
Rops1g02403 607 FunFam Heat shock 70 kDa protein 8 452 567 - -
Rops1g02403 607 FunFam Heat shock 70 kDa protein 8 127 182 - -
Rops1g02403 607 CDD HSP70_NBD 64 444 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 90 102 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 429 449 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 62 75 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 457 476 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 397 413 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 538 554 - -
Rops1g02403 607 PRINTS 70kDa heat shock protein signature 202 222 - -
Rops1g02403 607 Gene3D Actin; Chain A, domain 4 297 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02403 Rops-Chr1 46544747 46549492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02403 63 557 Calmodulin-binding Proteins AT3G12580 38.124 6.09e-103 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02403 K09489 - gmx:100809773 1016.53