Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02398 ATGGAACCGGGCATTAGATCAGGTGGTTCTGGGGTTGTGGTGAAGAATAGGAACTCCTCAGGTTGTTTAATTGTTCGAAAGAAAGGTGATGGTTTGGGTGCTACAGCTACTTCCACTGCTGGGGTTGGTTCTTCCACCTCTCGGAAGCACTATGAATCCAAAAAAAGGCCCAACATCAACATGTCCTTGAGTGATTCAGGATCAAGTGATGAGTTGCCGATGCCCCCTGGTAGAAGGCTCGTCCCCGAGACTATTCGAGTCTGTAATGGTTTGACTGCCTTTGAGCGGGGCATGATAGGTGGGAGTGAATTTAGTAGGAAGAGGGATAGAATGGAGCGAATTAGGGGTAATGGGGAAGGTATGATTGTGGAGAATGGATTTGACAAGAGGGAAAGGAAACGTAATAAGCTGGATGCATTTGGTTTCGAAGAATACGAGGATATGGATGTGGAAAAGATGAGAAGGAGGCATTTTGATGGCAATGGAGTTGGTTTCGGCGGAGGAAGGTTGATGGGATCGGTGCATACTGCTAGAAGTGTTGTTGATAGGGAATTTGAAACAGGTACAAGCAGACACATTCTTGATAAGAGGAAGAACTTGTATTATGATAGGGCAAGCGGCTTGTATGCAGGGGATAATGTTGATCACAAGATGAACAGGGATGGGGCTCAGCTGCCTCTACCCTTGTTGAGGGAGAAGTTTGATTCAGATAAAACCATTAGGGTTCAGGGGAAAAATGGCGTTTTGAAGGTAAAAGTTAATAAGAATAAGGCAGCTGGGCCATTAGAACACTATGATCATTGCAAACCTGTGGAAAGCAGGCAAAGGTTGAAGACCGAAGGGACTGCCAAGAGGAATGTTCTGATTCATCCTTCGTCATTCATGGAAGCAAAACCTGTTGGGAAACCAGGATTACTTGTTAGGCCAGAGAAGAAACAGACAGCATCAAGAAAATCATTGTCAAGTAAGGACAGTAAGCATGATGAGTGGGATTCAGATAACAGTGACACATCGTTGAATCCAGGAACGGGAAATGCTGAAGCTCGTGAGCCTGAAAAGAGGACAATCTCTGAGGATGAACAGACTCCTGTGCATGGAAAGCTCCCAACTTCAACAACGAAAGAAGGAAAAATCAAGCGTGGTAGTGGCACAGAAAAACAGAAGCTTCGAGAAAGAATAAGGGAGATGCTGCTGAATGCAGGTTGGACCATAGACTATCGACCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAGTTGAGTGATGATGTTAACAAGGCCAAGCCCAAAGGCGATAGCTCTTCCTTTGCTCCTATAGCAGATGAGGTGCTCAGTCAATTGACGAGGAAAACTAGGAAGAAAATGGAGAAAGAATTAAGGAAGAAGAAGAAGCAGGAAAGATATGAGGGTGAAAGTGATAGTGGAAAAGAGCCTTGCATAAGAAGATCTGCCAGCAACAAGCAGGATATGAATAACACGGATAGTGATAGCAATGAGGAGAAATTAAGCTCTTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAATAGCACTAGCTCTAAAAGCCAGAATGCAACTCATCACTCAAATGATGGAATAGAAAAATTATTCACTGGATCCGATCCTCATCTTCTGCATGGACGGAAAAGTAGAAAACATGGAAGATGCACCTTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGGCTTTGTCCCTTATATGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTAGAGTTAAGCCAAAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTCGAGCTTCATGCAGGAAGCAAATTACCGCAGCCATATCAAAATATATTTCTGGACTCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGGGAAAATTGGTTTCCATTCAGTGGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAATTGCTTGGATATACAGATGCTTCCCCCTGGTGAATGGCATTGTCCAAATTGCACTTGTAAATTCTGTGGAATAGCCGGTGGAACTTCTAAAAAAGAAGTTGATGCAACTGTGTATGTCCTACGTACTTGCAACTTGTGTGAGAAAAAATATCATTCCTCTTGCGCTAAGGATATGGATGCCCTTCCTAATAATGTCAATACGTCCGGCCTTTCTTTTTGTGGGAAAGAGTGCAATGAGCTTTTTGAGCACTTGAAGAAGTTCCTTGGCACCAAGCATGAACTAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAACAGATGAAGACTCAGAGGCAGCTAGTAGGGGAATTACCCAGAGGGTGGAATGCAATTCCAAGCTAGCTATTGCACTGACTGTGATGGACGAATGCTTTTTAGCTGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGATTGAATTATAGTGGCTTTTACACTGCTATTTTGGAGCGAGGGGATGAAATCATTTGTGCAGCATCTATCAGGTTCCATGGAACTAAGTTAGCAGAGATGCCATTCATTGGGACTCGTCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGTCCTTTGCTCTCTGAAGGTTGAAAAATTGGTTATTCCTGCAATTGCTGAACTCATGCATACATGGACAGCAGTTTTTGGCTTCACACATCTGGAGGAGTCACTCAGGCAAGAAATAAAGTCGTTGAATGTGTTGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTGGAGCAAGGAAAACATGAGGGCAATACAACTGCCACAGGTTTGGAGAAAACAGGAAATGGAGACAATGATTTTATTGAGACCAAAATGGCAAATAGGTCAGATATGGATTCCTCAACTCTGAAAGATTCCCAAGGAAGTGATGATGCTAGTACAAATCCTGCCAGTGAGATGAATGATGAATATAGCGATGCTTCTCAAGAACTATACAACCCAGGTTTGGTTGACAAGACTAAGTGTTCCAAATCTCAATCTGAGGAAAGGTTATTGGATTCAGTTTCAGATAAATGTGTTGCTCCTAGCACTAGTCATGGTGCACCAAAATTGAAAAAAAAAATAGCGATGGCTTCTTCTGTTGATAAATTGAATCCTTCTTTTTCCAAATGTCAATCCTTTTCTCTGAATGACACTTCTGTGAGTAGTCACCCATTGGATGTTCCTGATTGCCATGAAGGTCTAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTTCAGTAGAAAACCTTGACAGGAAATGTCACTCAGGTGTGAATTGTGATTCATCGGAGCTTGACATTAACCTAGAGTTGGTTTCTCAAGTAGCACGCAATACTCTGACTTCTAAAGAGGTTTACATGACTGATGCTTGTGAGGTTGTTGAAGCCGTTCCTTCAGGAAATTTATCCGAAGAGAAGAATATTACCAGGGAGAATAATCAAAATGTGGATGTCTCTGATTCTGCTCTCAATCCTGTTAATGAGAGTTTGTTGCATGTAAGATCTAATCCCAACACTGAAATGGGATATGAGGGCGAGAAGAATTTACATTTGAATCCAGGAGCTGTTTCAAATGAAATTAGTTTTGATGAAAATGGCGTGAATGCTACTGGTGATAGCTTCGAGACTGATCCAGTCTAA 3942 0.4216 MEPGIRSGGSGVVVKNRNSSGCLIVRKKGDGLGATATSTAGVGSSTSRKHYESKKRPNINMSLSDSGSSDELPMPPGRRLVPETIRVCNGLTAFERGMIGGSEFSRKRDRMERIRGNGEGMIVENGFDKRERKRNKLDAFGFEEYEDMDVEKMRRRHFDGNGVGFGGGRLMGSVHTARSVVDREFETGTSRHILDKRKNLYYDRASGLYAGDNVDHKMNRDGAQLPLPLLREKFDSDKTIRVQGKNGVLKVKVNKNKAAGPLEHYDHCKPVESRQRLKTEGTAKRNVLIHPSSFMEAKPVGKPGLLVRPEKKQTASRKSLSSKDSKHDEWDSDNSDTSLNPGTGNAEAREPEKRTISEDEQTPVHGKLPTSTTKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLSDDVNKAKPKGDSSSFAPIADEVLSQLTRKTRKKMEKELRKKKKQERYEGESDSGKEPCIRRSASNKQDMNNTDSDSNEEKLSSFIKQGSKSMKNKMIENSTSSKSQNATHHSNDGIEKLFTGSDPHLLHGRKSRKHGRCTLLVRSSNKGLNSESDGFVPYMGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLDSGVSLLQCQIDAWNRQENSGKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWHCPNCTCKFCGIAGGTSKKEVDATVYVLRTCNLCEKKYHSSCAKDMDALPNNVNTSGLSFCGKECNELFEHLKKFLGTKHELEAGFSWSLIHRTDEDSEAASRGITQRVECNSKLAIALTVMDECFLAVVDRRSGINLIRNVLYNSGSNFSRLNYSGFYTAILERGDEIICAASIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFSAIESVLCSLKVEKLVIPAIAELMHTWTAVFGFTHLEESLRQEIKSLNVLVFPGIDMLQKLLVEQGKHEGNTTATGLEKTGNGDNDFIETKMANRSDMDSSTLKDSQGSDDASTNPASEMNDEYSDASQELYNPGLVDKTKCSKSQSEERLLDSVSDKCVAPSTSHGAPKLKKKIAMASSVDKLNPSFSKCQSFSLNDTSVSSHPLDVPDCHEGLALVQETACSDPCSVENLDRKCHSGVNCDSSELDINLELVSQVARNTLTSKEVYMTDACEVVEAVPSGNLSEEKNITRENNQNVDVSDSALNPVNESLLHVRSNPNTEMGYEGEKNLHLNPGAVSNEISFDENGVNATGDSFETDPV* 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02398 1313 SMART PHD_3 755 813 IPR001965 -
Rops1g02398 1313 SMART PHD_3 713 754 IPR001965 -
Rops1g02398 1313 SUPERFAMILY FYVE/PHD zinc finger 703 759 IPR011011 -
Rops1g02398 1313 Pfam Tify domain binding domain 636 686 IPR032308 -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 273 387 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 347 361 - -
Rops1g02398 1313 ProSitePatterns Zinc finger PHD-type signature. 714 753 IPR019786 -
Rops1g02398 1313 CDD PHD2_CHD_II 714 753 - -
Rops1g02398 1313 PANTHER PHD FINGER PROTEIN 12 329 1156 IPR042163 GO:0003714|GO:0045892
Rops1g02398 1313 Coils Coil 466 486 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 29 79 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 311 334 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 1046 1078 - -
Rops1g02398 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 803 IPR013083 -
Rops1g02398 1313 ProSiteProfiles Zinc finger PHD-type profile. 711 756 IPR019787 -
Rops1g02398 1313 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 904 988 IPR016181 -
Rops1g02398 1313 Pfam PHD-finger 714 756 IPR019787 -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 482 504 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 468 574 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 1045 1078 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 372 387 - -
Rops1g02398 1313 MobiDBLite consensus disorder prediction 505 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02398 Rops-Chr1 46476158 46483166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02398 4 1042 PHD Transcription Factor Family AT4G14920 49.718 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops1g02398 TDBD 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02398 - - gmx:100814247 1823.14