Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02385 ATGGCTTCAGGGGCAATTTTCTCGTCGTTACGGCGGAGAAGGTCGCCGACGTTGGAAGCTTTTCTCGCCCCAGTTGACTTAAGCGACGTCGCTTTGGTTCAGACCCTTGTATCGGTGGCAAACGAGCTTGTTTCGTGTTTTTCAAAGCGTACCTTCTTCTTTCAACGGAAGAATTCACGGTCTCTGATCAGAAAAGTTGAGATTTTTCAGTCGCTTTTGGAGTATTTAAGCGATTCTGGTGGCGCGTGTCTTCCACCTACCGCGGTGCTTTGTCTTAAGGAGCTTTACCTGTTGCTGTACCGGTCCAAGATTCTTCTTGATTATTGCGATCAATCGAGTAAGCTGTGGCTTTTGCTTCAGAACCATTCGATTTCATGTCACTTCCATGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCTATTAAGGATGTTGGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGTTGTTGCAGAAACAGTCTAGGAGGGCTAAGTTGTTTATAGATATGAAGGATGATGCTCTCAGGATTCGATTCTTTTCTTTTCTTGATGAGTTTGAGAATGGAAGGATAACATATTCATCTGAATTGCAATCTTTCTATGTTGACAAGTTGAAGATTTTGGATGCTGCTAGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACATTGAGCCTACAATTTCTGTGCTTAAAGGTTTTGTGGCCATGACAAGGTATTGCAGGTTTTTGCTTTTTGGTTTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAGCCTAAGAAGAGATTGATTGCAGGTGCAATTCCTTATCTGCGGAACTTGCTTTCATCGTCCAATGCTGTTGCTCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCCATCTTTGACAAGAACAAAAGTCGGATCATGGATGAAGAAGGGTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGACACACAACTGAGGCAAGGGAAAATGTTTCGCAACAACATTTGACCTATCAGTCGTCCATGACTATAAGAAAATAA 1077 0.4197 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVSVANELVSCFSKRTFFFQRKNSRSLIRKVEIFQSLLEYLSDSGGACLPPTAVLCLKELYLLLYRSKILLDYCDQSSKLWLLLQNHSISCHFHDLNQEISTLLDVFPIKDVGLSKDVREQVELLQKQSRRAKLFIDMKDDALRIRFFSFLDEFENGRITYSSELQSFYVDKLKILDAASCRTEIEALEEQIVNHEGDIEPTISVLKGFVAMTRYCRFLLFGFEEDELDLENGSQKKPKKRLIAGAIPYLRNLLSSSNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENVSQQHLTYQSSMTIRK* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02385 358 Gene3D - 27 145 IPR036537 GO:0007166
Rops1g02385 358 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 322 IPR000225 GO:0005515
Rops1g02385 358 PANTHER U BOX DOMAIN-CONTAINING 279 343 - -
Rops1g02385 358 Pfam Armadillo/beta-catenin-like repeat 276 308 IPR000225 GO:0005515
Rops1g02385 358 Gene3D - 267 353 IPR011989 -
Rops1g02385 358 SUPERFAMILY ARM repeat 54 341 IPR016024 -
Rops1g02385 358 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02385 Rops-Chr1 46306012 46307151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02385 279 344 U-box Gene Family AT1G29340 68.182 9.79e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02385 - - gmx:100811153 460.685