Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02379 ATGAACACACCAGAGAGGAACCGGGTCAACACTCCCCTCTCTAAGGCTGAGGAGTCACCCGTATTCAACTTTATCAATAGTTTATCTCCTATAAAGCCCGATAAGTCTGTTCACATTACTCAGACATTCAATTCACTTAGCTTTTCATCCCCTCCATCTGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATAATCCGCTGGGCACATCAAAGCCTAAGGTTTCATCTGAAGATGTAAATAAAGTACACTCAAATGAAGAGGCTCTTGCAGATTCTACTCATGCACATCATAACTCGAGTGAGTTACAGGAAAATACTGCTCAAGGGATTTCAGTTGGAGATGCTTCAATTGAGCTATCTAGTGAACACACAAAATTCTCAGTTGAGCTACCACAAACCTTACAATATAATTGTGGTAGCCCTGGCTATGATCCTCCACTTTGTGGTGTTGAGGCTAACCCTCTTTTGGAATTGCCTGATGAGGTGGCGTCAGATGTTGCCTATGTTCAGGAAGGCTGTAAAACAGATCCAGTTGTGCCTGAACCAAAGGGTGAAGGTCCAGACTGTGATTGGGATAGTTTAATTCCCAATGCTACTGATCTGTTAATTTTTAATTCCCCAAATGAAGCAGAAGCCTTTAAGGGTCTAATGCAGAGACCATTGGGCTCTTCTATGCGACTAAGCGATTTTGTGTCCTTGCTTCCACAATCCACCATCAATAATGATCAGCAAATACACATGGTTGATTCAGTTGCTTCTGAGCCAATAGCAGCCATAGACACAGATGCTACGCAGGACAATCTTGCCAATGTTGCTTTGATGACTAGTAATCCAAATGAGAAAATGGATGATAAGCTTGTTTCTGTCTCGCACCGTGCTATACGGAGGCGCTGCCTTGACTTTGAGATGGCCAGTGTGCGAAGGAAGAACTCAGATGATAATTCTAGCACATCACAGTCAGAGGTAAGGAATGCTGCTAATGAAAACCAACTGCTTCCTGCAAAACGCAATGGGAATTCACAAAGGTGCATTTTGCCGGGAATTGGTTTACACTTGAATGCACTTGCAACCTTAAAAGATTACAAAGGCATACCAAATGGAAAGCTGTCTTGTGGAGTACAACTCAGTCTGCCCAGCTCTAATTCTTCCTTGCAAATCTCTACAAGCCAAGAACATCAGAATCTACAGTTGGTACCTGTATCATCTGAAAGAGAATTGGATCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGGCAACAGCTTACATGGCTGGTGAAGATTTCAATCAGAATAGCCCCAAAAGGAAAAGGCGCAAGTTGGAGCCGGCTGGAGAAACTGAGGGCTGCAAACGTTGTAATTGCAAGAAGTCAAAGTGTCTGAAGCTTTATTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGTTCCTGTCAGGATTGTTTCAACAAACCTATTCATGAAGATACTGTCCTTCAAACTCGAAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCCAAAGTCATCAGAAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACTCCAGCTTCGGCAAGACACAAAAGAGGATGCAACTGCAAGAAATCAAACTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCATATGGTAGAAAAGATGGTTCTGCTCCTATAGGAATAGAAGGTGAGCCAGAAGAAGAAACGGAAGGAAGTGACAAGGGTGTGGGGGAAAAAGCTTCACAGAAAACTGAAACTCAGAATATGGAAGATCATACAGATTCTGCTCTTGTCTCAACACCATTACGGCTTTCCAGGACATTGCTTCCATTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTCACAACCATCTCTGGTTCTGGATTGTTTGCCACCCAAAAGCTTGGGAAACCAAATTCTCTTTGGTCTCAAGCTAAGCATTTTCAACATGTTCCAGATGATGAAATGCCAGATATTCTCCGTGGTGATAGCTCTCCTATCGCTTGCATCAAAACTTCTTCTCCAAATAGCAAGAGGATCTCCTCTCCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGCAGAGGTGGCAGGAAGTTGATATTACAATCTATTCCTTCATTCCCTTCTCTCACCAATCACCCTTAG 2256 0.4348 MNTPERNRVNTPLSKAEESPVFNFINSLSPIKPDKSVHITQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVSSEDVNKVHSNEEALADSTHAHHNSSELQENTAQGISVGDASIELSSEHTKFSVELPQTLQYNCGSPGYDPPLCGVEANPLLELPDEVASDVAYVQEGCKTDPVVPEPKGEGPDCDWDSLIPNATDLLIFNSPNEAEAFKGLMQRPLGSSMRLSDFVSLLPQSTINNDQQIHMVDSVASEPIAAIDTDATQDNLANVALMTSNPNEKMDDKLVSVSHRAIRRRCLDFEMASVRRKNSDDNSSTSQSEVRNAANENQLLPAKRNGNSQRCILPGIGLHLNALATLKDYKGIPNGKLSCGVQLSLPSSNSSLQISTSQEHQNLQLVPVSSERELDPSDNGVQPAEDCSQATAYMAGEDFNQNSPKRKRRKLEPAGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNAYGRKDGSAPIGIEGEPEEETEGSDKGVGEKASQKTETQNMEDHTDSALVSTPLRLSRTLLPLPFSSKGKPPRSFVTTISGSGLFATQKLGKPNSLWSQAKHFQHVPDDEMPDILRGDSSPIACIKTSSPNSKRISSPNCDLGSSPSRSRGGRKLILQSIPSFPSLTNHP* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02379 751 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 748 IPR044522 GO:0003700
Rops1g02379 751 SMART CXC_2 544 585 IPR033467 -
Rops1g02379 751 SMART CXC_2 458 499 IPR033467 -
Rops1g02379 751 ProSiteProfiles CRC domain profile. 459 584 IPR005172 -
Rops1g02379 751 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 461 496 IPR005172 -
Rops1g02379 751 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 547 582 IPR005172 -
Rops1g02379 751 MobiDBLite consensus disorder prediction 318 342 - -
Rops1g02379 751 MobiDBLite consensus disorder prediction 587 631 - -
Rops1g02379 751 MobiDBLite consensus disorder prediction 690 751 - -
Rops1g02379 751 MobiDBLite consensus disorder prediction 315 342 - -
Rops1g02379 751 MobiDBLite consensus disorder prediction 603 623 - -
Rops1g02379 751 MobiDBLite consensus disorder prediction 703 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02379 Rops-Chr1 46192729 46197916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02379 17 748 CPP Transcription Factor Family AT4G14770 46.277 7.58e-165 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Rops1g02379 TCR 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02379 - - gmx:100804447 1168.68