LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g02377	ATGTATTGTTGGGATCAGCTAAAAGATTCGTTTTCAAATTTGAAGTTTTTAGTGTTGAAGATGGATTCGGAAGTTGAGGAAGTTAAGACACCAAAGGCTGAATTGGAACCAGAAGAAGCTTTGAATTCAAAGATGAAGGGTGCTGGAAACCAAAGCAGCAAAGATATGATTTTCAGAGCTGATAGAATTGATCTCAAAAGCTTAGATGCCCAGCTGGAAAAGCACTTGAGCAGGGTTTGGTCGAGAAGCATTGAGCCAAAAAGGCCTAAAGAAGAGTGGGAGATTGATTTGGCCAAATTGGATTTACGATATGTTGTTGCTCATGGTGCTTATGGTACTGTCTACAGGGGCACATATGATAGCCTAGACGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTTGCCACTGCTGCTGAAACTGCTGCTTTAAGGGCATCTTTCAGGCAGGAGGTTGCTGTCTGGGACAAACTCGACCATCCAAATGTCACAAAATTTGTTGGAGCTTCAATGGGTACTTCAAATCTTAAGATTCCCTCAAAAAACCCTTCAAATGATGGTCAAGAAACCCTTCCTTCTAGGGCATGTTGTGTTATTGTTGAGTTTCTTCCTGGTGGGACACTGAAACAATTCTTAATAAAAAATAGGCGGAAGAAACTTGCTTATAAGATTGTGGTTCAGCTGGCTTTGGACCTCTCCAGAGGTCTTAACTATCTGCATTCGAAGAAAATTGTTCATCGAGATGTGAAATCAGAGAATATGTTGCTAGATTCTAATCGGAATCTAAAGATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTATGAATCCAAGTGACATGACTGGTGAAACTGGAACCCTTGGATATATGGCACCTGAGGTTCTGGAGGGTAAGCCTTACAACAGGAGATGTGATGTGTATAGCTTTGGCATTTGCTTGTGGGAGATTTATTGCTGTGACATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCATCTGCAGTTGTCCGACAGAATTTACGACCAGAAATTCCAAGGTGTTGTCCAAGTGGCTTAGCAAATATCATGAGGAAATGCTGGGATGGGAATCCAAACAAGCGTCCAGAAATGAGTGAGGTCGTGAGAATGCTAGAAGCAATTGATACTAGTAAAGGTGGTGGTATGATACCTGAAGATCAGGCTACAGGTTGCTTTTGTTTTGCCCCAACCCGTGGTCCCTAA	1224	0.4257	MYCWDQLKDSFSNLKFLVLKMDSEVEEVKTPKAELEPEEALNSKMKGAGNQSSKDMIFRADRIDLKSLDAQLEKHLSRVWSRSIEPKRPKEEWEIDLAKLDLRYVVAHGAYGTVYRGTYDSLDVAVKVLDWGEDGVATAAETAALRASFRQEVAVWDKLDHPNVTKFVGASMGTSNLKIPSKNPSNDGQETLPSRACCVIVEFLPGGTLKQFLIKNRRKKLAYKIVVQLALDLSRGLNYLHSKKIVHRDVKSENMLLDSNRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSGLANIMRKCWDGNPNKRPEMSEVVRMLEAIDTSKGGGMIPEDQATGCFCFAPTRGP*	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g02377	407	Gene3D	Phosphorylase Kinase; domain 1	89	181	-	-
	Rops1g02377	407	FunFam	Serine/threonine-protein kinase HT1	204	389	-	-
	Rops1g02377	407	SMART	serkin_6	100	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g02377	407	Pfam	Protein tyrosine and serine/threonine kinase	103	378	IPR001245	GO:0004672\|GO:0006468
	Rops1g02377	407	ProSiteProfiles	Protein kinase domain profile.	100	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g02377	407	CDD	STKc_MAP3K-like	106	378	-	-
	Rops1g02377	407	SUPERFAMILY	Protein kinase-like (PK-like)	79	378	IPR011009	-
	Rops1g02377	407	Gene3D	Transferase(Phosphotransferase) domain 1	206	390	-	-
	Rops1g02377	407	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	74	381	-	-
	Rops1g02377	407	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	245	257	IPR008271	GO:0004672\|GO:0006468
	Rops1g02377	407	FunFam	Kinase suppressor of Ras 1	89	183	-	-
	Rops1g02377	407	PRINTS	Tyrosine kinase catalytic domain signature	349	371	IPR001245	GO:0004672\|GO:0006468
	Rops1g02377	407	PRINTS	Tyrosine kinase catalytic domain signature	305	327	IPR001245	GO:0004672\|GO:0006468
	Rops1g02377	407	PRINTS	Tyrosine kinase catalytic domain signature	201	214	IPR001245	GO:0004672\|GO:0006468
	Rops1g02377	407	PRINTS	Tyrosine kinase catalytic domain signature	239	257	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g02377	Rops-Chr1	46161817	46165271	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g02377	42	407	MAP Kinase Kinase Kinase	AT3G22750	79.076	0.0	618

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Rops1g02377		PK_Tyr_Ser-Thr	2.9e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g02377	-		-	gmx:100803917	712.99