Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02355 ATGAGTAAGTGGCCATTCACAGTGTCCCAGTGGGAGGAACTGGAACATCAAGCTTTGATTTACAAGTACATGGTGGCTGGTCTTCCTGTCCCTCCTCATCTTGTCATTCCCATTCACAACTCCATTTCCCACCACCTTCCCCCTACCCACTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGAAGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCAAAGGAAGCATACCCTGACTCCAAATACTGTGAGAGGCACATGAACCGTGGCCGCAGCCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACACAATCATCATCCACTGTGGCATCACTGACTGTAACTGGTGGCAGCAGTGGAACTGGAAATTTCCAGAACCTTACCACAAATTCCTTTGGTAATCCCCACGGTACTACTGGTTCTGGAACTGACCTATATCATCTGGATTCCATTCCCTATGGGATCCCAAGTAAAGAATACAGGTATTTTCAAGGACCTAAATCTGAAGGTGGTGAACATAGTTTCGTTTCCAAAACTTCAGGAAGCAACAAGGTTCTCCAGATGGATTCACAGCTGGAACACGCTTTGATGCCAACAGGAGTTACCTCATTCTCTACATCAAGATCAAACAATAATTCCATGTTGCAGGGTGATTATCTCCAGCCTTCTTTTTTATCAAGTGAGTATGCTTCAGGAGAAACTGTGAAGCATGAGGGTCAGTCTCTTCGACCTTTCTTTGATGAATGGCCTAAAAGCAAAGAGTCATGGTCTGGTCTGGAAAATGAGAGATCCAACCAGACAGCTTTCTCCACAACTCAACTCTCAATATCGATTCCTATGTCGTCATCAAACTTTTCCACAACTAGCTCTCAATCCCCGCATGGTGAGATTTAA 915 0.4536 MSKWPFTVSQWEELEHQALIYKYMVAGLPVPPHLVIPIHNSISHHLPPTHLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMNRGRSRSRKPVESQTMTQSSSTVASLTVTGGSSGTGNFQNLTTNSFGNPHGTTGSGTDLYHLDSIPYGIPSKEYRYFQGPKSEGGEHSFVSKTSGSNKVLQMDSQLEHALMPTGVTSFSTSRSNNNSMLQGDYLQPSFLSSEYASGETVKHEGQSLRPFFDEWPKSKESWSGLENERSNQTAFSTTQLSISIPMSSSNFSTTSSQSPHGEI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02355 304 ProSiteProfiles WRC domain profile. 62 106 IPR014977 -
Rops1g02355 304 PANTHER GROWTH-REGULATING FACTOR 5 5 291 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops1g02355 304 MobiDBLite consensus disorder prediction 103 118 - -
Rops1g02355 304 SMART QLQ_2 4 40 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops1g02355 304 Pfam WRC 63 105 IPR014977 -
Rops1g02355 304 Pfam QLQ 5 38 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops1g02355 304 MobiDBLite consensus disorder prediction 92 118 - -
Rops1g02355 304 ProSiteProfiles QLQ domain profile. 5 40 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02355 Rops-Chr1 45917456 45921335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02355 5 105 GRF Transcription Factor Family AT3G13960 63.303 1.68e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops1g02355 WRC 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02355 - - gmx:100797906 459.529