Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02346 ATGGTTTATCCTCCACTTCACAACAGTTCAAGTGCAGTGATGATGAGAACACCAAGCAGTGATGAAATTGGTTTGAAGAAGGGGCCTTGGAGCCCAGAAGAGGATAAACTACTAGTGGATTACATTCAGAAACATGGCCACAGGAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGGCTAAGGTGGACTAATTATCTAAGGCCTGATATCAAAAGAGGAAAATTCTCTGATGAAGAAGAACAAATGGTCATCAATTTACATGCAGTTCTTGGGAACAAGTGGGCAGCTATAGCATCTCATCTTCCAGGGAGGACTGATAATGAAATTAAGAATTTTTGGAACACCCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGACCCAGTGACCCACCGTCCAAGATCAGATCACCTAAACCTTCTTAGCAATCTACAACAGATATTGGCTGCTGCGAACATTATCAGTAGTTTCACAAACCCTTTTGACACAAATGCCCTAAGGCTACAGTCAGATGCCACAGAACTAGCCAAACTCCACTTGCTGCATAACATGGCTGCTAGTCCTCCTGCCTCAAACTCACTGCCACATGGTTTGCTAAATGATGTTTTAGGATTGAATCACTCTAACCTCCAAAATCTTTATAGTGTTTCAACTGGTTTTTCTTCTCAAGTTCAGCCCAATTTCCAAAGCTTTGAAGCCCCTCAGCAGCTACCACAAGCCGGTGGATATCAACAACACTTGAATGGCAGCAGAAATAGAAATAGTAGTTGCATGGAATCTCAAAAGTTTGATGAACAACTTGGTTCTATAAATGCTGCCCCCACATCATCATCAAATTCGCTTCCAAATCTGGTTTCAGCCTCACCTGAACGTTCCCAAGTTAAGCTAGCAGAAAACATGGCAAACCCAAACCCTTCTTCCACCACCTTCGAAATATGGGGAGAATTCATGAATGAGGATGCAAACGATACTTACTGGAAAGATTTCATAGACCAACATTCCAACCAGCCATGGTCGACAGTCCCATGA 1053 0.4283 MVYPPLHNSSSAVMMRTPSSDEIGLKKGPWSPEEDKLLVDYIQKHGHRSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQMVINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQILAAANIISSFTNPFDTNALRLQSDATELAKLHLLHNMAASPPASNSLPHGLLNDVLGLNHSNLQNLYSVSTGFSSQVQPNFQSFEAPQQLPQAGGYQQHLNGSRNRNSSCMESQKFDEQLGSINAAPTSSSNSLPNLVSASPERSQVKLAENMANPNPSSTTFEIWGEFMNEDANDTYWKDFIDQHSNQPWSTVP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02346 350 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Rops1g02346 350 Gene3D - 82 129 - -
Rops1g02346 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Rops1g02346 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 277 - -
Rops1g02346 350 CDD SANT 82 125 IPR001005 -
Rops1g02346 350 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Rops1g02346 350 MobiDBLite consensus disorder prediction 1 27 - -
Rops1g02346 350 FunFam Transcription factor MYB39 82 143 - -
Rops1g02346 350 SMART sant 79 127 IPR001005 -
Rops1g02346 350 SMART sant 26 76 IPR001005 -
Rops1g02346 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Rops1g02346 350 MobiDBLite consensus disorder prediction 278 300 - -
Rops1g02346 350 FunFam MYB-related transcription factor 26 79 - -
Rops1g02346 350 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Rops1g02346 350 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Rops1g02346 350 Gene3D - 26 79 - -
Rops1g02346 350 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Rops1g02346 350 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02346 Rops-Chr1 45788892 45791419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02346 14 339 MYB Transcription Factor Family AT5G16770 47.989 1.33e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g02346 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02346 K09422 - gmx:547488 444.506