Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02339 ATGTTATCAGTGGCTCCTTCTGTTGATACCAAACAGAGCCCAGAGGTGTCTGCTTCTGCCCCTCAAAATGCCCAAACTACCCACATATTCAAATCAAAATTACCAGACATACCTATCTCCAACCACCTCCCTCTCCACACCTACTGCTTCGAGAAACTCTCTGAATTCGCAGACCGTCCATGTGTCATCGAAGGTTCCACCGGAAAAATCCACACCTACGCCGAGGCACACCTCTTGTCTCGGAGAATCGCCGCCGGCATGTCCAAGCTCGGAATCAAGAAAGGCGATGTGATCATGATTCTCCTCCAAAACTCAGCCGAATTCGTCTTTTCATTCATCGCAGCCTCCATGATCGGCGCCGTCGCCACCGCCGCCAATCCATTTTACACCACCGCAGAGATTTTCAAGCAACTCACCGCTTCCAAAGCGAAACTCATCATCACGCAATCAATGTACGTTGACAAACTAAGGAACCACGAGGACACTCACTTGAAGCTCGGTGAAGACTTCAAGGTGGTCACCGTCGACGAAACGCCGGAGAATTGCCTTCACTTCTCTGTGATTTCAGAGGGAAAAGAAGACGAAGTTCCGGAGGTGGAGATCGATCCAAACGACGCCGTTGCGCTACCGTTTTCTTCAGGAACGACAGGATTACCAAAGGGAGTGATTCTTACACACAAGAGTTTAACAACAAGCGTGGCTCAACAAGTGGATGGAGAGAACCCGAACCTGTATCTGAGTTCGGAAGATGTTTTGCTCTGCGTGCTTCCACTGTTTCATATATTCTCTCTCAACAGTGTGCTTTTGTGTGCGCTGAGAGCGGGGAGTGCGGTTTTATTGATGCACAAGTTCGAGATAGGGACATTGCTGGAGCTGATACAGCGGCACAAGGTGACGGTGGCGATGGTGGTGCCGCCGTTGGTGCTGGCGCTGGCCAAGAATCCCACGGTGGCAGAGTTTGACCTGAGTTCGATCCGTTTGGTGCTGTCGGGGGCTGCGCCGCTAGGGAAGGAGCTGGAGGAGGCTCTCAGGAACAGGGTGCCTCAGGCTGTTTTGGGACAGGGGTACGGGATGACAGAGGCAGGGCCTGTGCTGTCAATGTGCTTGGGCTTTGCAAAGCAGCCATTCCCAACAAAGTCAGGTTCATGTGGCACTGTAGTAAGAAATGCAGAGCTGAAGGTTGTTGACCCTGAAACTGGTCGTTCTCTTGGTTATAATCAACCCGGTGAAATTTGCATCCGAGGCCAACAAATCATGAAAGGATATTTGAATGATGAGAAGGCCACATCAACAACTATTGATGCGGAGGGTTGGCTTCATACTGGTGATGTTGGCTATATAGATGATGATGATGAGATTTTCATAGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCTCCAGCAGAACTTGAAGGCCTTCTTGTAAGCCATCCCTCCATTGCAGACGCAGCTGTTGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCCGTTGCCTTTGTGGTGAGGTCAAATGGCTTTGATCTAACTGAAGAGGCTGTAAAGGAGTTTATAGCTAAACAGGTAGTGTTTTATAAAAGACTACACAAAGTTTACTTTGTGCATGCAATTCCCAAGTCTCCATCAGGAAAAATATTGAGGAAAGACCTCAGAGCAAAGCTGGAAACCGCCACCCAGATGCCCTAG 1701 0.4944 MLSVAPSVDTKQSPEVSASAPQNAQTTHIFKSKLPDIPISNHLPLHTYCFEKLSEFADRPCVIEGSTGKIHTYAEAHLLSRRIAAGMSKLGIKKGDVIMILLQNSAEFVFSFIAASMIGAVATAANPFYTTAEIFKQLTASKAKLIITQSMYVDKLRNHEDTHLKLGEDFKVVTVDETPENCLHFSVISEGKEDEVPEVEIDPNDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLSSEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLELIQRHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRLVLSGAAPLGKELEEALRNRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYLNDEKATSTTIDAEGWLHTGDVGYIDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETATQMP* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02339 566 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 460 - -
Rops1g02339 566 Pfam AMP-binding enzyme 53 465 IPR000873 -
Rops1g02339 566 Pfam AMP-binding enzyme C-terminal domain 474 549 IPR025110 -
Rops1g02339 566 SUPERFAMILY Acetyl-CoA synthetase-like 33 560 - -
Rops1g02339 566 CDD 4CL 39 555 - -
Rops1g02339 566 Gene3D - 21 459 IPR042099 -
Rops1g02339 566 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 25 557 - -
Rops1g02339 566 FunFam 4-coumarate--CoA ligase 2 461 562 - -
Rops1g02339 566 Gene3D - 460 563 IPR045851 -
Rops1g02339 566 ProSitePatterns Putative AMP-binding domain signature. 209 220 IPR020845 -
Rops1g02339 566 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02339 Rops-Chr1 45662175 45667044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02339 21 472 Monolignol Biosynthesis Gene Families AT1G65060 73.407 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02339 K01904 - gmx:547492 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02339 1 45662175 45667044 Rops1g02339 1 45662175 45667044 ECH