Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02337 ATGGGAAGACAACCTCCGCAAACATGTCGGGAGGAAGAGGAGGAGGAGGTGCCGGGTCGTGGAGCTACAGTTTCTGGTCAATCAATGTCAACAAGCAGAAGTGCTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCTACACCAGCTAGTGATAACACTTTTCTGAGATTGAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCCAAGAAGAAAAAGAGAGGCCAGCGTGCCGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTCATCCCCTGATCAGAAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTAAATGATATTGAAGAACTAAAGACGGAGCGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAAGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAACGAGCAATTATATAGCTCAGGAAATGCTCCCATTGGAGGTGTGTCTTTGCCTTTTATTCTGGTACAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGTACTCCCTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCTCAGAATGACAATATAACACACAACCCTACAGATGGAGGTGAAGGTTCCAGCATGTCAGGCTTGTACCATGCGCAGGTTCCTACTTTAGTTTCAAACCCGCCAGTTAGGTCTCCCTCGTCACCACCACTTCCTGGAATTTTAAAGGCAAGAGTTAAGAATGAGCATTGA 1026 0.4396 MGRQPPQTCREEEEEEVPGRGATVSGQSMSTSRSAGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVAKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVSSPDQKQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPIGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQNDNITHNPTDGGEGSSMSGLYHAQVPTLVSNPPVRSPSSPPLPGILKARVKNEH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02337 341 SUPERFAMILY E2F-DP heterodimerization region 178 295 IPR037241 -
Rops1g02337 341 MobiDBLite consensus disorder prediction 23 55 - -
Rops1g02337 341 Gene3D - 84 177 IPR036388 -
Rops1g02337 341 MobiDBLite consensus disorder prediction 315 341 - -
Rops1g02337 341 FunFam Transcription factor-like protein DPB 178 302 - -
Rops1g02337 341 Pfam Transcription factor DP 180 295 IPR014889 -
Rops1g02337 341 MobiDBLite consensus disorder prediction 1 19 - -
Rops1g02337 341 CDD DP_DD 177 280 IPR014889 -
Rops1g02337 341 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Rops1g02337 341 Gene3D Transcription factor DP 178 300 IPR038168 -
Rops1g02337 341 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
Rops1g02337 341 PIRSF Txn_factor_DP 5 341 IPR015648 GO:0005667|GO:0051726
Rops1g02337 341 SMART DP_2 179 339 IPR014889 -
Rops1g02337 341 PANTHER TRANSCRIPTION FACTOR DP 22 295 IPR015648 GO:0005667|GO:0051726
Rops1g02337 341 MobiDBLite consensus disorder prediction 1 92 - -
Rops1g02337 341 FunFam Transcription factor-like protein DPB 84 177 - -
Rops1g02337 341 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Rops1g02337 341 Coils Coil 188 222 - -
Rops1g02337 341 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02337 Rops-Chr1 45628204 45634372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02337 90 288 E2F-DP Transcription Factor Family AT5G02470 55.500 2.31e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops1g02337 DP 2.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02337 K04683 - gmx:100797603 582.022