Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02334 ATGATGAGGCTGAAGTCATATGCGGGTCTTAGTTTGATTGCAACTCTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCTGCTATGGTGTATTTATCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGTGTATTCTCTGGCAATTAACAAAAAAGGTATTCCTGGGTTCTCTCCGAGAAGCGGAGGTAGAGAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCAATTACTATCTTTAGGCAGGATTTCTCTGTTACATTCCTTGCGATGGTCACGGCACTGTTGTTAATTAAGGCTTTGCATTGGTTGGCCCAAAAGAGAGTTGAGTACATCGAGACCACTCCTTCAGTGCCCATGTTGTCCCATATTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTAGATAGCATTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACATGGCAGGCTTCAGTTTCACTATTCTTTGCTTTTGAGTACATGATACTGGCAACAACAACGGTTTCAATTTTTGTAAAATATATTTTCTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACATTTTACCTGGAACTTATTAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTAATACGAGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGCGTTGCGGATTACATAAGATATCGTAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGACGCAACCTGCATTATTTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACACCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCCCTGGTTGTGCCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGGATCACAGTCAGATGGTCATCGACAGGGAACTGGGACAGCCCCTGGAAGCACAGCTCAAACCGAGGTTGGCAGTGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCCAGACTCCAAGCCGCCGCCGCTGCCGCTTCGATGTATGAGAAGTCTTACGTTTATCCCTCTGCAACTTCTTTTGTACGCCCTCCTGGACACACTCTTTATCCCCCAGTTCAAATATCTACGGCTGAATCTTCTAATACTGACCTTGGAGAACAAGCTTCCAGTGAACAAGCGCAAAAGCAATTTCTTATCCCTGGTGGACCAACAAATGTATACTTCCCTCCAATGGGACCCTTCCATTTTCTACCTTCCCAAACACATGCAGCCCCTGTGAATTATGGAGAGGGGTTTGGAAATTATCCAAATATCCCAGGCTCTCAGCTGGAAGCTCATGAAAAACTTATACGATGGCAGATTGAGATTCTGCAAAATCAGTTCCAGAATCTGCAGAGGATGAAGGCTGACAGAAGTGCAGATGACGGCACATCGTCATCGGATAGCAGAGGCAAGCTTAACACTTCCTCCTCATCTGTTTCTGAACATGGTTACCATGAGGAGATTCAAGATGGAAAAGCATAA 1668 0.4359 MMRLKSYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFAFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGTAPGSTAQTEVGSGVATDSLSRHQARLQAAAAAASMYEKSYVYPSATSFVRPPGHTLYPPVQISTAESSNTDLGEQASSEQAQKQFLIPGGPTNVYFPPMGPFHFLPSQTHAAPVNYGEGFGNYPNIPGSQLEAHEKLIRWQIEILQNQFQNLQRMKADRSADDGTSSSDSRGKLNTSSSSVSEHGYHEEIQDGKA* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02334 555 MobiDBLite consensus disorder prediction 527 544 - -
Rops1g02334 555 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Rops1g02334 555 SUPERFAMILY RING/U-box 272 336 - -
Rops1g02334 555 PANTHER RING ZINC FINGER PROTEIN 1 527 - -
Rops1g02334 555 MobiDBLite consensus disorder prediction 515 555 - -
Rops1g02334 555 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Rops1g02334 555 SMART ring_2 292 329 IPR001841 -
Rops1g02334 555 CDD RING-H2_synoviolin 289 330 - -
Rops1g02334 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Rops1g02334 555 MobiDBLite consensus disorder prediction 340 377 - -
Rops1g02334 555 Pfam Ring finger domain 291 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02334 Rops-Chr1 45593725 45598593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02334 1 530 C3H Transcription Factor Family AT3G16090 64.540 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02334 K10601 - gmx:100816441 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02334 1 45593725 45598593 Rops1g02334 1 45593725 45598593 ECH