Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02321 ATGTTTTCCCGATGCAATAAAGAAAGCTATCTTGCACAGAAAGCATTATCATGTTATTGCGTGTTTTTGTATTGTGACACAAAGGGAACACTAGTTTCGGTTTCTTTTATATTTGTTGTTTTCGGCATTAACATTTGTGAGCGAGGGAGAGGGAGTGCCCTAGCTCTCGAGCTTTGCATCTTCGCGAAGTCGCAATTCGTCGTTCTAACTGCTAGCGACGGAGAAATCTGTTTCTGTCGCTCCAGCGTTCCGATTTTGAGGCTGCGTCGTAAGGAGAAACCAATGGACGAGGGAAAGCATAAATCGAGGAAAGAAGATTATGAGGTGAAAGATGGTGATTCTAAGAGGAGTCACCGTGATAGAGATCGTGAGAGAACTGGAGAAAGAGGTAAGGATAGAAGCGATGGGAGGCACAGGGATAGGGAGAAGAAGGATCGTGAATCGCGAAGACATGAGAGAGAGAAGAGTAGTGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATAGGACACGAGTTCAGGATGTGGACAGAGAAAAAGCCCGAGACAAGAAAAGGGAAAGAGATAGGGAAGACAGGGAAAGGGAGAGGACAGATAGAGTAAGGGAGAAAGAAAGAGAAAGAAAGGAGGATAAGGAGAGGAGTAGAGATAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAAGGAAAGAGAAAGGGGGAGGAAAGTACGTGAGAGGGAGAAGAAGCATAGGAATGTTGATAGTGAATATAGTGATGGTGAATCCAGGGAGAGAGATAGGAAGCGGCGTAGGAAAGAGGATGATGATTACAAGGGGCGAGAGAGGGAAAGGAGTGCCAACAAGTCAAACAGGAAAACTGATGAACTTGAAGCAAGCCCGAGGAAAAAGAGTGATGGAGATGACTCAGATACCAAAGAGAGAGAGAGAAAACCGACTCGTGAAGAGGAGATAGAGGATGAACAAAAGAGATTGGATGAAGAAATGGAAAAACGGAGAAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAAAAGGAAGAAGCAGAAAGAGAGCATGGTGAAGCAATTGCCGGTGAACCCGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACAGGTGCTGGGAAGCAAAATACAGCTATGGATGTAGATGAAGATGACAAACCTGCTGATAAGGAACCTACAGAGCCGATGGCGGTAGATGTTGATAATGGAACAGTTGCATCTGATTTACAGAATGGGGCTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCAATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTTACCTCGTCACTTTCTGATAAAGCTGCAGAGTTGAAACCCAAGGATAAAGGGGATGAGCTAAGTAGTGGTGCACAGTCAAGGAAAGGTCCAAATAAATCTATTGGCAGAATAATTCCTGGTGAAGATTCCGACTCAGATTATGCAGATGTTGAAATTGAGGGGGATCCATTAGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAAACGAAAGCTGAGAAGCTTTCTATAGTTGACCACTCGAAGATCGACTATGAACCATTCAAAAAAATTTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGTTGCAGCATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGACGTGCCAAAGCCTGTAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGATACAATAAAGAAGTTGAACTATGAAAAGCCAATACCTATTCAAGCTCAGGCGCTGCCTATAATAATGAGTGGTCGAGACTGCATAGGCGTTGCTAAAACTGGTTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCGCCAGTTGTTACAGGAGACGGACCTATTGGGCTTATTATGGCCCCCACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAGAAATTTGCAAAGGTACTGGGTCTCAGATGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGAATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCAGCCAGATCGTCAAACGGTTCTCTTCTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAGCACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATCTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATATGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCAAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGTAATCTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTTGAATTGGTGGTCAATTTTGATGTTCCAAACCACTACGAAGATTATGTACATCGTGTTGGGCGCACTGGCAGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAGGGACTGGAGCAAGCCCATGGTACTGGTTATGGAGGCAGTGGCTTTAAATTTAACGAAGAGGAAGATGAGGTGAGGAGAGCAGCGAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATTTCACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACAAAAGCAAATTCTCCTGCAATGCCTACTCCCATCTCTGCTGCCCAGCTGATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTGCAACTGTCTTGCCTGGGACAGGGCTACCCCTTGCCGCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACAACTTAGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCTGTTTCGGAGTGGACTGGAGCTGCCATTACCACCAGGGGGCAGTATTTCCCACCTGGCAAAATTCCTGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCAGTTAAGAGAGCCAAAGCAGAATTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGTCCGGGACAAGTTGCTCATATTATCTGCCTTTCTTACCGATTCGTTGTTATACAGGTGGGTCTTTTTAGCCTATGCTTGCATGTTCAATGTCGTTCCATCCATTGCGCTGGCTTCGTGGCTGTCTAAGGTGCTGATCATGGTTTTGTTCGGTGTTCTTTTGTCATGA 3828 0.4444 MFSRCNKESYLAQKALSCYCVFLYCDTKGTLVSVSFIFVVFGINICERGRGSALALELCIFAKSQFVVLTASDGEICFCRSSVPILRLRRKEKPMDEGKHKSRKEDYEVKDGDSKRSHRDRDRERTGERGKDRSDGRHRDREKKDRESRRHEREKSSDSEDRYDRDREKRKDKDKDRTRVQDVDREKARDKKRERDREDRERERTDRVREKERERKEDKERSRDRERERRDHEREKEKEKERERGRKVREREKKHRNVDSEYSDGESRERDRKRRRKEDDDYKGRERERSANKSNRKTDELEASPRKKSDGDDSDTKERERKPTREEEIEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREHGEAIAGEPESGKTWTLEGESDDEEGTGAGKQNTAMDVDEDDKPADKEPTEPMAVDVDNGTVASDLQNGAAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAAELKPKDKGDELSSGAQSRKGPNKSIGRIIPGEDSDSDYADVEIEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYEPFKKIFYIEVKEISKMTPEEVAAYRKQLELKIHGKDVPKPVKSWHQTGLASKILDTIKKLNYEKPIPIQAQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIQPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDALFKDMLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKANSPAMPTPISAAQLISNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPVSEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPVRDKLLILSAFLTDSLLYRWVFLAYACMFNVVPSIALASWLSKVLIMVLFGVLLS* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02321 1275 Coils Coil 326 363 - -
Rops1g02321 1275 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 748 756 IPR000629 -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 398 416 - -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 465 512 - -
Rops1g02321 1275 SMART ultradead3 612 817 IPR014001 -
Rops1g02321 1275 Pfam Helicase conserved C-terminal domain 827 935 IPR001650 -
Rops1g02321 1275 Gene3D - 803 977 IPR027417 -
Rops1g02321 1275 CDD DEADc_DDX46 582 803 - -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 1009 1040 - -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 472 486 - -
Rops1g02321 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 975 IPR027417 -
Rops1g02321 1275 Coils Coil 208 243 - -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 92 370 - -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 92 439 - -
Rops1g02321 1275 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 624 802 IPR014001 -
Rops1g02321 1275 Pfam DEAD/DEAH box helicase 618 789 IPR011545 GO:0003676|GO:0005524
Rops1g02321 1275 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 830 974 IPR001650 -
Rops1g02321 1275 Gene3D - 545 802 IPR027417 -
Rops1g02321 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 804 IPR027417 -
Rops1g02321 1275 FunFam probable ATP-dependent RNA helicase DDX17 555 805 - -
Rops1g02321 1275 Coils Coil 1195 1218 - -
Rops1g02321 1275 CDD KH-I_AtRH42_like 1129 1220 - -
Rops1g02321 1275 SMART helicmild6 854 935 IPR001650 -
Rops1g02321 1275 MobiDBLite consensus disorder prediction 1009 1023 - -
Rops1g02321 1275 CDD SF2_C_DEAD 814 944 - -
Rops1g02321 1275 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 593 621 IPR014014 GO:0003724
Rops1g02321 1275 PANTHER RNA HELICASE 539 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02321 Rops-Chr1 45423910 45429762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02321 580 955 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 3.07e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02321 K12811 - gmx:100784306 1613.2