Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02310 ATGGTACTTGTTAATGTGAGTAACTTCACTACGTTGATGCTACGGTTCAGCAAGCTTGTGCGCCATGTGTTCCCCAAACGTTTTATGTCACAGAATATTTGTTGTTCAATACCCAGAAACATTAACGCACAGATACGTGCTCTTTCCATGCAAGGCAACCTTGAAGAAGCTCTTTCCCTTGTTTACACTCACTCTTCTCTGTCCCTTGAAGCCTATGCCTCTCTGTTCCATGCTTGTGCTCAGAAGAAGTGCCTCCAACAAGGCATGGCTCTGCACCATTACATAATTGACAAACACCCCACAATTCAAAATGACACCTTTCTTACCAATCACATTGTAAATATGTACTGTAAGTGTGGTCACTTAGCCAATGCTCGCCACCTGTTCGATCAAATGCCACACAGAAACATTGTTTCTTGGACTGTTCTCATTTCGGGGTATGCGCAATCTGGCCTAATCAGAGAGTGTTTATCTCTCTTCTCTGGCTTGTTGGCTCGCTTCCGTCCCAATGAATTTGCTTTCGCAAGTTTGCTTAGCGCTTGTGAGGAGCATGACATCAAATGTGGCATGCAGGTACATGCTGTTGCTTTTAAAATTTCTTTGGATGCCAGTGTATATGTTGCAAATGCTCTTATTACAATGTATAGCAAGTGCTCTGGTGGTTCTGGTGGAGGTTATGATCAAACTGCAGATGACGCCTGGACCATGTTCAAGTCAATGGAGTTTCGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTTCAATTTCGTGGACTTGGGGACAGAGCCATTAGCCTGTTTACACATATGTACTGCTATGGAATTGGGTTTGACCGTGCCACACTACTTAGTGTCTTCTCTTCCTTGAATGAATGCAGTACTTTTGATGACATTAACATACATCTCAGGAACTGTTTTCAATTGCACTGTCTCACTATTAAAAGTGGTCATATTTCAGAAGTTGAAGTGATAACTGCATTAGTAAAATCCTATGCAAATCTTGGGGGACACATTTCTGACTGCTATAAGCTCTTCCTTGATACAAGTGGCCGACATGATATTGTGTCATGGACTGCTATTATTACTGTGTTTGCAGAACGGGATCCTGAGCAGGCTTTCCTCCTTTTCTGTCAACTGCATCGTGAAAATTTTGTGCCGGACTGGCACACATTCTCAATTGCCTTAAAAGCTTGTGCATACTTTGTGACTGAGCAACATGCCCTGGCAGTTCACTCACAAGTAATTAAAAAAGGGTTTCAGGAAGACACGGTTCTTTCAAATGCCTTGATACATGCTTATGCAAGGTCTGGCTCCTTAGCTTTGTCTAAACAAGTATTTGATGAAATGGGTTGCCATGATTTGGTTTCTTGGAATTCAATGCTTAAGTCCTATGCCTTACACGGGCAAGCTAATGACGCACTGGAGCTCTTCCAGCAAATGAATGTTCGTCCTGACTCTGCAACCTTCGTTGCCCTTCTCTCAGCTTGCAGTCATGCTGGACTTGTTGAAGGAGGAGTGAAAATTTTTAACTCTATGTCTGATAATCATGGTATTGCTCCTCAGCTAGATCACTATGCCTGCATGGTTGACCTTTATGGACGAGCTGGGCTGTTACTTGAGGCTGAGAAGTTGATACATAAAATGCCAATGAAAGCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCAGGAAGCATGGAGAGACTCGCTTGGCCAAATTAGCAGCTGATAAATTTAAAGAGTTAGAGCCTAGAAATTCATTGGGATATGTACAAATGTCAAACATATATTCCTCTGGCGGAAGTTTTATTGAAGCTGGCCTGATTAGGAAGGAAATGAGAGACTCCAAAGTGAGAAAAGAACCTGGATTAAGTTGGGTTCAGATAGGGAAGCAAGTTCATGAGTTTGGCTCTGGTGGTAAACAACATCCACACAGGGAGGCCATATCAAGCCAGCTTGAGATATTGATTGGACAATTGAAAGAAATTGGTTATGTGCCAGAGATTAGCTTAGCCTTGTATGACACAGAAGTGGAGCACAAAGAAGACCAATTGTTTCATCACAGCGAGAAGATGGCTTTGGTATTTGCCATATTGAATGAAGGAAGTTTGCCTTGTGGTGGGAACGTCATTAAGATAATGAAGAATATCCGTATCTGTGTGGATTGCCATAACTTCATGAAATTAGCATCACGTCTATTTCAGAAGGAGATCGTTGTGAGAGATTCAAACCGCTTTCACCATTTCAAATATGCTACATGCTCTTGTAATGACTATTGGTAA 2289 0.4181 MVLVNVSNFTTLMLRFSKLVRHVFPKRFMSQNICCSIPRNINAQIRALSMQGNLEEALSLVYTHSSLSLEAYASLFHACAQKKCLQQGMALHHYIIDKHPTIQNDTFLTNHIVNMYCKCGHLANARHLFDQMPHRNIVSWTVLISGYAQSGLIRECLSLFSGLLARFRPNEFAFASLLSACEEHDIKCGMQVHAVAFKISLDASVYVANALITMYSKCSGGSGGGYDQTADDAWTMFKSMEFRNLISWNSMIAGFQFRGLGDRAISLFTHMYCYGIGFDRATLLSVFSSLNECSTFDDINIHLRNCFQLHCLTIKSGHISEVEVITALVKSYANLGGHISDCYKLFLDTSGRHDIVSWTAIITVFAERDPEQAFLLFCQLHRENFVPDWHTFSIALKACAYFVTEQHALAVHSQVIKKGFQEDTVLSNALIHAYARSGSLALSKQVFDEMGCHDLVSWNSMLKSYALHGQANDALELFQQMNVRPDSATFVALLSACSHAGLVEGGVKIFNSMSDNHGIAPQLDHYACMVDLYGRAGLLLEAEKLIHKMPMKADSVIWSSLLGSCRKHGETRLAKLAADKFKELEPRNSLGYVQMSNIYSSGGSFIEAGLIRKEMRDSKVRKEPGLSWVQIGKQVHEFGSGGKQHPHREAISSQLEILIGQLKEIGYVPEISLALYDTEVEHKEDQLFHHSEKMALVFAILNEGSLPCGGNVIKIMKNIRICVDCHNFMKLASRLFQKEIVVRDSNRFHHFKYATCSCNDYW* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02310 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 521 IPR002885 -
Rops1g02310 762 NCBIfam pentatricopeptide repeat 456 481 IPR002885 -
Rops1g02310 762 NCBIfam pentatricopeptide repeat 489 521 IPR002885 -
Rops1g02310 762 FunFam Pentatricopeptide repeat-containing protein mitochondrial 187 303 - -
Rops1g02310 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Rops1g02310 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 104 695 IPR046960 GO:0003723|GO:0009451
Rops1g02310 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 484 IPR002885 -
Rops1g02310 762 Gene3D Tetratricopeptide repeat domain 192 300 IPR011990 GO:0005515
Rops1g02310 762 Gene3D Tetratricopeptide repeat domain 501 623 IPR011990 GO:0005515
Rops1g02310 762 Gene3D Tetratricopeptide repeat domain 405 500 IPR011990 GO:0005515
Rops1g02310 762 Gene3D Tetratricopeptide repeat domain 302 404 IPR011990 GO:0005515
Rops1g02310 762 Gene3D Tetratricopeptide repeat domain 38 186 IPR011990 GO:0005515
Rops1g02310 762 Pfam PPR repeat family 354 400 IPR002885 -
Rops1g02310 762 FunFam Pentatricopeptide repeat-containing protein At2g34400 412 658 - -
Rops1g02310 762 FunFam Putative pentatricopeptide repeat-containing protein mitochondrial 58 186 - -
Rops1g02310 762 Pfam E motif 568 630 IPR046848 -
Rops1g02310 762 Pfam DYW family of nucleic acid deaminases 666 762 IPR032867 GO:0008270
Rops1g02310 762 Pfam PPR repeat 456 481 IPR002885 -
Rops1g02310 762 Pfam PPR repeat 138 161 IPR002885 -
Rops1g02310 762 Pfam PPR repeat 489 515 IPR002885 -
Rops1g02310 762 Pfam PPR repeat 110 137 IPR002885 -
Rops1g02310 762 Pfam PPR repeat 526 550 IPR002885 -
Rops1g02310 762 Pfam PPR repeat 428 451 IPR002885 -
Rops1g02310 762 Pfam PPR repeat 246 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02310 Rops-Chr1 45319008 45321468 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02310 72 762 Glycoside Hydrolase AT3G49170 34.801 7.90e-131 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02310 - - gmx:100799117 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02310 1 45319008 45321468 Rops6g02843 6 51001354 51009948 PCT