Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02304 ATGGAAGAAGCAAGCAGCATGCAAGAATGTGTGATGGCCCCAACCACAACATCCTTCAGAGGAGTTAGGAAACGAAAATGGGGGAAATGGGTGTCAGAAATAAGGGAACCAGGGAAGAAAAGCAGAATATGGTTAGGGAGCTATGAGGCACCAGAAATGGCAGCAGCAGCATATGATGTAGCAGCTTTGCAGCTAAAAGGACGTGCAGCAAAGCTCAACTTTCCTGAATTGGTTGAGACTATGCCACGACCAGTTAGCTCCAAAGCTGAGGATGTGAGAGTGGCAGCTCAACAAGCAGCATTGAGGTTCAAGAGACCAATATCATCATCATCATCATCTGAAGGAGGTGGCAGTGTGGTTCCCACCAGGGTGGGGTTGTCACCAACACAAATTCAGGCCATCAATGAGTCTCCATTGGATTCACCAAAGATGTGGATGCAAATGACAGAGGCACTCATGTTTGGGTATGATGAGTCTATGATGATGCATTGTGGTGGTGGTGATGACAATGTTTTTCAGTTGAGTAAATGGGAAGAAATACAGTATGAATCGTTATGGGACTCATGA 567 0.4586 MEEASSMQECVMAPTTTSFRGVRKRKWGKWVSEIREPGKKSRIWLGSYEAPEMAAAAYDVAALQLKGRAAKLNFPELVETMPRPVSSKAEDVRVAAQQAALRFKRPISSSSSSEGGGSVVPTRVGLSPTQIQAINESPLDSPKMWMQMTEALMFGYDESMMMHCGGGDDNVFQLSKWEEIQYESLWDS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02304 188 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677
Rops1g02304 188 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Rops1g02304 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 144 - -
Rops1g02304 188 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Rops1g02304 188 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Rops1g02304 188 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Rops1g02304 188 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Rops1g02304 188 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Rops1g02304 188 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Rops1g02304 188 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02304 Rops-Chr1 45243524 45244090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02304 18 188 AP2-EREBP Transcription Factor Family AT1G33760 58.140 6.44e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02304 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02304 - - gmx:100788567 247.284