Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02303 ATGGACATGCCTTCTTCTTCTTCAAGTGGTGCTGCAACTTCTTCATACAGAGGTGTTCGCAAGAGGAAATGGGGCAAATGGGTATCTGAAATCCGTGAGCCAGGTACCAAGACCAGAATTTGGTTAGGAAGCTTCGAGACACCGGAGATGGCAGCAGCTGCATACGACGTCGCTGCGTTGCATTTCAGGGGACGTGAAGCCAGGCTTAACTTCCCTGAACTTGCAAGCACACTCCCTCGTCCTTTGAGCAACAATGCTGACCACATACGCATGGCTGCACATGAGGCTGCTTTGAGGCTCAGGACCAACACGGTGGCACCGGAGCAAGGTGGTTCCGGTGGTTCAACCACGACGGCTCCAATCACCGTGAGGCTCTCACCAACTCAGATTCAAGCGATCAATGACTCGCCCCTTGACTCACCTCAAACTTGGATGCAAATGTCACACCCCTTCATGTTGGATGATCGTTCCATCATGTTTGCAAATGAGTATGAGTTTCAGGAAAACGAGTGGGAGGATATTCAGAGTGATTCTCTTTGGGATCCTTAG 549 0.5082 MDMPSSSSSGAATSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELASTLPRPLSNNADHIRMAAHEAALRLRTNTVAPEQGGSGGSTTTAPITVRLSPTQIQAINDSPLDSPQTWMQMSHPFMLDDRSIMFANEYEFQENEWEDIQSDSLWDP* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02303 182 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Rops1g02303 182 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Rops1g02303 182 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Rops1g02303 182 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Rops1g02303 182 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Rops1g02303 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 143 - -
Rops1g02303 182 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Rops1g02303 182 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Rops1g02303 182 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Rops1g02303 182 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02303 Rops-Chr1 45208311 45209485 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02303 14 182 AP2-EREBP Transcription Factor Family AT1G71450 64.706 2.88e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops1g02303 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02303 - - aprc:113869810 319.701