Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02300 ATGGGATTCTGGGGTATTGAAGTGAAACCTGGCAAACCGTATCCTTATCATGCTGACAATGTGCGAGGAGTGCTTCATGTAACTCAGGCTACTCTAGGCATTGGCTCATCGACAGAAAAAAGCCTTCTTCAGTGCGCTTCTGGACACAAAAGTCCAGTGTTTTTGTGTTCACTGCTACCAAATAAGATTGAGTCATGCCCTTTGAATCTTGAGTTTGATGATGATGACTTGGTGGCATTCTCAGTGATTGGTTCACGAAGCATCCATCTTTCTGGTTACTTTGTGGCTGATGATGGGGATGAACTCAGGGATGACTATGAATATGATTCATTAGGAGAGGATATTGTGGGAACTGAGACTGAGGAGTCATCTGAGTATGATAGTGAAGATGAATATGCTGATGGCTTCATTGATGATAGTGACATTGACATGTACCCATCCTCGCCAGCCCGAAAAAGTGGAGTTGTAATTGAGGAAATAGAAGATGACAATAAACCTGAAAATGGAGATGATCCAACTAAGCAATTAAAGAAAAGGGAACAATCAGCTCACTTGAAACAGAAAGACAGCAAAAATTCTCAGCTTCCAATTGTCGTCAGGGGTGAGACTGACCTTGTTCTGGAAAGTGAAGATGAAGATGGTTTTCCAGTTTCCACTGCAGAGAAATCTGAGTCTCAGAAGTCAGAAGCAGAAATGAAAGGAGAACAAGCACATAAGAAAACTAAGAAAGCCAATAAGAAGGCAAAAGATGCTGATCATTTTGCTAGCTTAAAGCGAAAAGTTGAAAGTGCTGATGAAGATGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAAAAATAATAAGTTGAAAGAACATAGTAAAGGGGAAAGTGCTCATGCATCCGGCAATAACAATGAGACTAATGTTACTATGGCTACGCCAGATGAAAAGCATCCTGAGGAGTTTAAAACTACAACTGACCTGAACAAGGATGGGCATGATGAAGAACTATGCATTAACAAGGCCGTTGACGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGACCAAAGAGTCTGAAGGAGTAGCTGCTGCCAATCAAATTTCTCCAACTATTGAAAATAAAAATTTGTCTACCTCTGAGAAAAAGGGGAAGGAAAAAACTGAAGCCAAGCCATCTCAAGTGAGAACCTTTCCAAATGGATTGGTTGTTGAGGAGCTATTCATGGGTAAACCAGATGGAAAAAAAGCTGCTCCTGGGAAGAAGGTCAGTGTTAAATATATTGGCAAGCTAAAAAAAGATGGGAAAATATTTGACTCAAATGTGGGAAGAGCACCCTTTAAATTTCGCCTCGGTGTAGGACAAGTCATCAAGGGGTGGGAGGTTGGAGTCAATGGGATGAGGATTGGGGACAAAAGAAGAATAACAATTCCACCATCCATGGGATATGCAGACAAACGCGTTGGGAGTATACCACCAAATTCGTGGCTTGTATTTGATGTCGAGTTAGTTGATGTTGATCGCTGA 1506 0.4104 MGFWGIEVKPGKPYPYHADNVRGVLHVTQATLGIGSSTEKSLLQCASGHKSPVFLCSLLPNKIESCPLNLEFDDDDLVAFSVIGSRSIHLSGYFVADDGDELRDDYEYDSLGEDIVGTETEESSEYDSEDEYADGFIDDSDIDMYPSSPARKSGVVIEEIEDDNKPENGDDPTKQLKKREQSAHLKQKDSKNSQLPIVVRGETDLVLESEDEDGFPVSTAEKSESQKSEAEMKGEQAHKKTKKANKKAKDADHFASLKRKVESADEDEQLQDGKKKKKNNKLKEHSKGESAHASGNNNETNVTMATPDEKHPEEFKTTTDLNKDGHDEELCINKAVDEKKNKKKKKKKTKESEGVAAANQISPTIENKNLSTSEKKGKEKTEAKPSQVRTFPNGLVVEELFMGKPDGKKAAPGKKVSVKYIGKLKKDGKIFDSNVGRAPFKFRLGVGQVIKGWEVGVNGMRIGDKRRITIPPSMGYADKRVGSIPPNSWLVFDVELVDVDR* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02300 501 MobiDBLite consensus disorder prediction 371 385 - -
Rops1g02300 501 MobiDBLite consensus disorder prediction 157 387 - -
Rops1g02300 501 Gene3D - 355 501 IPR046357 GO:0003755
Rops1g02300 501 PIRSF FK506-bp_FPR3 47 281 IPR023566 GO:0003755
Rops1g02300 501 PIRSF FK506-bp_FPR3 252 500 IPR023566 GO:0003755
Rops1g02300 501 PIRSF FK506-bp_FPR3 1 53 IPR023566 GO:0003755
Rops1g02300 501 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Rops1g02300 501 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 408 497 IPR001179 GO:0003755
Rops1g02300 501 MobiDBLite consensus disorder prediction 306 338 - -
Rops1g02300 501 SUPERFAMILY FKBP-like 382 499 - -
Rops1g02300 501 Gene3D Nucleoplasmin core domain 1 100 - -
Rops1g02300 501 Coils Coil 332 352 - -
Rops1g02300 501 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 413 500 IPR001179 GO:0003755
Rops1g02300 501 MobiDBLite consensus disorder prediction 247 290 - -
Rops1g02300 501 MobiDBLite consensus disorder prediction 224 238 - -
Rops1g02300 501 MobiDBLite consensus disorder prediction 108 130 - -
Rops1g02300 501 MobiDBLite consensus disorder prediction 355 370 - -
Rops1g02300 501 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 279 - -
Rops1g02300 501 MobiDBLite consensus disorder prediction 157 187 - -
Rops1g02300 501 FunFam Peptidyl-prolyl cis-trans isomerase 389 501 - -
Rops1g02300 501 MobiDBLite consensus disorder prediction 291 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02300 Rops-Chr1 45196404 45201899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02300 413 497 Calmodulin-binding Proteins AT5G48570 49.438 6.70e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02300 K14826 - gmx:100792856 728.398