Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02292 ATGAATTGGAGTTCAGGGCTGCATGGGACAACCACAAATGGGAACAAGAAGTTTAAGGGAGTTAGGCGTCGAAAGTGGGGCAAGTGGGTATCGGAGATTCGTGTTCCCGGTACGCAAGAACGTTTGTGGTTGGGCACCTATGCTACACCAGAGGCTGCAGCGGTGGCTCATGATGTAGCTGTGTATTGTCTTAGAAGGCCTTCTAATTTAGACAAACTTAACTTTCCTGAGACCTTGTCTTCTTACTGTGTTCACCAGAGGGACATGTCTCCAAGGTCTGTTCAGAGGGTAGCTTCGGATGCTGGCATGGATGTTGATGCACGAAACATTGCAGGAAAAACATTAGCGTTGGCAGAAACTCACGTGAATGAGAACAAAACTGATGATGATCACATGCACAACACTGGTGTGTGTAATATTGGGCCAGCTGCTGATCGTTCTGATGTCTCTTGGTGGGAAGGTTTGGGGGATGATCGTGGTTCTGGGACTTGGCAAGGATTGACTCAAGATTGTGGAGAAGAAGAGGCCTTGAGCATTTCTATTGATGATTATCTTTAG 558 0.4695 MNWSSGLHGTTTNGNKKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSNLDKLNFPETLSSYCVHQRDMSPRSVQRVASDAGMDVDARNIAGKTLALAETHVNENKTDDDHMHNTGVCNIGPAADRSDVSWWEGLGDDRGSGTWQGLTQDCGEEEALSISIDDYL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02292 185 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Rops1g02292 185 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Rops1g02292 185 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Rops1g02292 185 Gene3D AP2/ERF domain 16 78 IPR036955 GO:0003700|GO:0006355
Rops1g02292 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 120 - -
Rops1g02292 185 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Rops1g02292 185 CDD AP2 16 78 IPR001471 GO:0003700|GO:0006355
Rops1g02292 185 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Rops1g02292 185 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02292 Rops-Chr1 45114769 45115326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02292 17 107 AP2-EREBP Transcription Factor Family AT1G71520 64.516 1.70e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02292 AP2 2.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02292 - - aprc:113869965 251.521