Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02282 ATGGGGTGCATCTGCTCAAAAGAGTCCTCAAACAAAGACAAAGAAGAAGAATATGAGAAAGAAAAAGAGTTAGACAAGTCTTCAGTACAACTGGTTCCCCCTACTGTCTCTGCTACACAGTTTGATGGTGGTGGCATGGATGGTTCAGGGCCCCATTTGGCTAAGTCATCCTCACAAGTATTTAGGGGGTCTTCCCAAAAGCTTCCAGAAGATAAAAGCAACCACTCCTCAAAAAGCCAGCATCAAAGATGTAAGACAACACATGCTGGTGGAGGTGAAAGAAAGCCACTAATGAGTAGAATACTTAGCGTGCAACATTGTACAGAAGAACATTTTGATGCTGGATGGCCATCATGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTTCCTAGACGGGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCTTGACTTGGAAACTGGTAAATTTGTGGCTTTGAAGAAAGTTCGCTTTTCAAGTACAGATACAGAAAGTGTACGTTTCATGGCAAGGGAAATCTCTATTTTGCGCCAACTTGACCATCCTAATGTCCTCAAACTTGAGGGTCTTGTCACATCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGACTAGCATCTTTACCTGGCATGAAATTCACTGAATCACAGATTAAATGTTTCATGCAGCAACTGCTTTGTGGGCTTGAACACTGCCACAGTCGGGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTGATTGACAACAATGGAAATCTTAAGATTGGAGATTTTGGTCTTGCAACTGTTTATGAACCTGAGAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTATGGTATAGGGCACCTGAACTTTTGCTAGGTGCTACAGATTATGGAGCTGCAATTGACTTGTGGAGTGTTGGTTGCATTCTAGCAGAATTGCTAGTCGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGCGGTTCCCCATCTGAAGACTTTTGGCAGAGAACAAAACTTCCCCATGCAATAAGTTTTAAACCACAACACCCTTACAACCGCCAAGTCACTGACACTTTTAAAAACTTCTCTCCTGCGGCATTGGCTCTTGTTGACAAGCTCCTTGCAATAAAACCAGAAGATAGAGAATCTGCAACTTCCGCACTCAAGAGTGAGTTCTTCACTACAAATCCGCTACCTTGTGATCCTTCTAGTTTACCAAAGTTTCCACCAAGCAAGGAGATTGATGTGAGGCGTCGAGATAAGGATACAACAAGAAAAAACAATGAAGCTGGTAAAGGACGTAGGCCGGTATCTGTTTTAAGGGAAGCAGGAGATACCAAAGAGTATAATGCTAGGGGAGATATGTCTATAAGGGAAAAGTCAAATACTAGAATGTCCCATCTTAAATATGAATCCCAGGAGGATGGGGGATCTCACCACAAGTGTGAGCCAACCAGAGTATCTCAGCAGAATGGCTATGTACATTCTGTTTCAGCAGGACCATCCTCATTGAGTAAGAGACAAGAATCATCTAGGAAGAATTCAGAGTTACGGAAACAGAGTTCTCATGTGAATCAGGAAGCAGTAGATTTCTCTCAATCTTCTCTTAAAAAGGAACCAGGAATGTCAGTCAGAGAACCCGGGATGGGGTATATGCCAAAGAAAAATAGGATCCATTGCTCAGGACCATTGATGCCTCCGGGTGGGAACGTTGAAGACATGCTGAGAGAGCATGAGCGGTTAATGCAAGATGTTTTCCGTAGTGTGAAGAAGAACAATCCTGAAAAACAAAGAAACCATTGTTAA 1896 0.4304 MGCICSKESSNKDKEEEYEKEKELDKSSVQLVPPTVSATQFDGGGMDGSGPHLAKSSSQVFRGSSQKLPEDKSNHSSKSQHQRCKTTHAGGGERKPLMSRILSVQHCTEEHFDAGWPSWLSSVAAEAIKGWVPRRADSFEKLDQIGQGAYSSVHKALDLETGKFVALKKVRFSSTDTESVRFMAREISILRQLDHPNVLKLEGLVTSRTSTSLYLVFEYMEHDLAGLASLPGMKFTESQIKCFMQQLLCGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYEPEKKQPLTSRVVTLWYRAPELLLGATDYGAAIDLWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEDFWQRTKLPHAISFKPQHPYNRQVTDTFKNFSPAALALVDKLLAIKPEDRESATSALKSEFFTTNPLPCDPSSLPKFPPSKEIDVRRRDKDTTRKNNEAGKGRRPVSVLREAGDTKEYNARGDMSIREKSNTRMSHLKYESQEDGGSHHKCEPTRVSQQNGYVHSVSAGPSSLSKRQESSRKNSELRKQSSHVNQEAVDFSQSSLKKEPGMSVREPGMGYMPKKNRIHCSGPLMPPGGNVEDMLREHERLMQDVFRSVKKNNPEKQRNHC* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02282 631 ProSiteProfiles Protein kinase domain profile. 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02282 631 MobiDBLite consensus disorder prediction 8 27 - -
Rops1g02282 631 FunFam probable serine/threonine-protein kinase At1g54610 222 463 - -
Rops1g02282 631 PANTHER CELL DIVISION PROTEIN KINASE 137 429 - -
Rops1g02282 631 MobiDBLite consensus disorder prediction 551 569 - -
Rops1g02282 631 MobiDBLite consensus disorder prediction 429 495 - -
Rops1g02282 631 MobiDBLite consensus disorder prediction 52 67 - -
Rops1g02282 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Rops1g02282 631 MobiDBLite consensus disorder prediction 441 495 - -
Rops1g02282 631 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Rops1g02282 631 Gene3D Transferase(Phosphotransferase) domain 1 227 462 - -
Rops1g02282 631 Gene3D Phosphorylase Kinase; domain 1 134 226 - -
Rops1g02282 631 FunFam probable serine/threonine-protein kinase At1g54610 126 221 - -
Rops1g02282 631 CDD STKc_CDK9_like 139 423 - -
Rops1g02282 631 SUPERFAMILY Protein kinase-like (PK-like) 132 431 IPR011009 -
Rops1g02282 631 SMART serkin_6 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02282 631 Pfam Protein kinase domain 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02282 631 MobiDBLite consensus disorder prediction 525 582 - -
Rops1g02282 631 MobiDBLite consensus disorder prediction 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02282 Rops-Chr1 44996483 45000973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02282 131 462 Core Cell Cycle Gene Families AT5G10270 51.297 4.14e-118 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops1g02282 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02282 K08819 - gmx:100791743 924.465