Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02278 ATGCAGGGAAGCGCAGCCGACGGAGAAGCCTTGGACTTCGAGCCTGAGGACGATGACTTGATGGACGAGGACGCCGACGCTTCTCCACCTTCTCATCCCAAGCTCAAATCCGCCATCACCGGCGGTGACTCTTCCTCTCTCTCCGCTCCCAAGAAGACCAAGGGTCGCGGTTTCCGTCAGGACTCCGATCCCAACCGCAATTCCCGTCTCTCCGCCTCTGACTTCGACTCTCTCACCACCGAGGGTGGCCCTGGCCCTCAACGATCTATTGAAGGATGGATTATTTTGGTCACCGGAGTCCACGAGGAGGCGCAAGAGGATGATTTGCAAAATGCCTTTGGTGAATACGGAGAGATTAAGAACCTCCATTTGAATCTCGATCGTCGCACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCCGAGCTTCTTACCCAAACCCTTTATGTTGACTGGGCTTTCAGCAGTGGACCTATTAATGAGTCAGTCAGAAGAAAGAATGCTAGACCTACTCGTGAACGGCGATCCAGGAGTCCTCGGAGGAGATATTGA 600 0.5217 MQGSAADGEALDFEPEDDDLMDEDADASPPSHPKLKSAITGGDSSSLSAPKKTKGRGFRQDSDPNRNSRLSASDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTLYVDWAFSSGPINESVRRKNARPTRERRSRSPRRRY* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02278 199 FunFam RNA-binding protein 8A-like 25 190 - -
Rops1g02278 199 SMART rrm1_1 94 167 IPR000504 GO:0003723
Rops1g02278 199 MobiDBLite consensus disorder prediction 178 199 - -
Rops1g02278 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 164 IPR000504 GO:0003723
Rops1g02278 199 MobiDBLite consensus disorder prediction 185 199 - -
Rops1g02278 199 MobiDBLite consensus disorder prediction 10 24 - -
Rops1g02278 199 MobiDBLite consensus disorder prediction 64 84 - -
Rops1g02278 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Rops1g02278 199 MobiDBLite consensus disorder prediction 1 90 - -
Rops1g02278 199 PRINTS RNA binding motif protein 8 family signature 140 156 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Rops1g02278 199 PRINTS RNA binding motif protein 8 family signature 158 170 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Rops1g02278 199 PRINTS RNA binding motif protein 8 family signature 47 59 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Rops1g02278 199 PRINTS RNA binding motif protein 8 family signature 84 98 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Rops1g02278 199 CDD RRM_RBM8 87 174 IPR033744 GO:0003729
Rops1g02278 199 SUPERFAMILY RNA-binding domain, RBD 86 197 IPR035979 GO:0003676
Rops1g02278 199 Gene3D - 9 185 IPR012677 -
Rops1g02278 199 PANTHER RNA-BINDING PROTEIN 8A 7 198 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02278 95 169 Eukaryotic Initiation Factors Gene Family AT3G11400 30.667 4.26e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02278 K12876 - gmx:100527187 309.301