Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02270 ATGGAATCTATGTTTCAAGAAGAAGGGTCATCTTCTGTGACTTCTTCACCTCTACAGTTCTTCTCTATGATGTCACTTTCACCTGGCATAGGATCTCCCTATCCATGGCTAAGAGAACTGAAATCTGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTGTGCAAACCATGTAGCTGCTGGTAATCTTGAAAATGCAAATATCACACTTGAGCAAATTTCCCAGCTTGCCTCCCCTGATGGTGATACTATGCAACGAATTGCTGCATACTTCACTGAAGCACTTGCTGATCGGATTCTGAAATCGTGGCCTGGCCTTCACAGGGCCCTCAATTCCACCAGAATAGTCATGGTTTCTGAAGAAATTCTTGTACAGAAGCTCTTCTTTGAGCTTTTTCCGTTCTTGAAGGTGGCATATATTCTGACAAATCAGTCTATTGTTGAGGCAATGGAAGGGGAGAAAATGGTACATATAATTGATCTCAGTGCTGCGGAACCTGCACAATGGATTGCTCTTCTCCAAGTTTTGAGTGCACGTCCTGAAGGCACTCCTCATTTGAGAATAACTGGGGTGCATCAGCAGAAAGAGGTTTTGGATCAGATGGCTCATAAACTTACTGAAGAAGCAGAAAAGTTGGATATCCCTTTCCAATTCAATCCTGTAGTCAGCAAGTTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTTGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTGGCCTTGGATGATGAAGCCTTGCGGAGAAAATCTCCTCTTTTGTCTAAAAATTCAAATGGAATTCACCTGCAAAAAGTCCTGCTCATGAACCAAAGCACATTGGGTGATTTGCTTGAAAAAGATGTGGTTAATGGCTGTAGCCCAAGTCCCGACTCAGCTTCATCATCACCGGTATCTTCAACTGCTTCAATGAATGCAGAGGGCTTTCTTAATGCTTTATGGGGATTATCTCCAAAGGTCATGGTTGTAACAGAACAAGATTCTAATCATAATGGTTCCACTTTGATGGAGAGGCTATTGGAAGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCTACTGTCCCAAGGACATCATTGGAGAGATTAAAGGTGGAGAAGATGCTTTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAGGGAGCTGAAAGAAAGGAAAGACATGAAAAGCTGGACAAGTGGATCCAGAGACTTGATTTATGTGGGTTTGGCAATGTGCCTTTAAGCTATTATGGTATGTTGCAAGCACGTAGGTTCCTGCAGAGCTATGGTTGTGAGGGATATAGGATGAGGGAAGAAAATGGTTGTGTAGTAATTTGCTGGCAGGATAGGTCCTTGTTTTCAACAACAGCTTGGAGACCAAGGAAGTAA 1425 0.4189 MESMFQEEGSSSVTSSPLQFFSMMSLSPGIGSPYPWLRELKSEERGLYLIHLLLTCANHVAAGNLENANITLEQISQLASPDGDTMQRIAAYFTEALADRILKSWPGLHRALNSTRIVMVSEEILVQKLFFELFPFLKVAYILTNQSIVEAMEGEKMVHIIDLSAAEPAQWIALLQVLSARPEGTPHLRITGVHQQKEVLDQMAHKLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDEALRRKSPLLSKNSNGIHLQKVLLMNQSTLGDLLEKDVVNGCSPSPDSASSSPVSSTASMNAEGFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVPRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWIQRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVICWQDRSLFSTTAWRPRK* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02270 474 Pfam GRAS domain family 49 471 IPR005202 -
Rops1g02270 474 ProSiteProfiles GRAS family profile. 40 471 IPR005202 -
Rops1g02270 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 467 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02270 Rops-Chr1 44797895 44800237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02270 1 474 GRAS Transcription Factor Family AT1G50420 68.465 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops1g02270 GRAS 1.7e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02270 - - cave:132164091 803.127