Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02259 ATGTCGTGCGGTGAAATTGATATTCATTTCCCTTTCGGTTTGAAAGGAGCAAATCAAAGTCGTGAGTGTAGCTACCCCAGATTCCAGCTTTCTTGCAATAACCATAGCCAGACCATTCTTACCGTCTCAGGTTCAGGGGATTTTGTTGTCAAAAGTATCAACTACGAGGAACAAACCATTCAGGTAAACGACCCAGATGGGTGCCTCCCAAAACGTTTCTTGCAAAACTTGAGCTTTTCTGTCTCCTCCCCATTCATGTTTGACGCTAGCATATATAACTTTTATGACCTCATCTTCCTTCGATGCCCCTCAAACATAACTGAACCACTGCCACCAATTTCTTGCCTGAGTGATCCCAGCAGCCTCAACTCTTCATCGGTCATATTCATATTTTCATGGTGGCTACCTAGCGACTCATCACCCTTGCACGAGTGCGAGGTGATATCCTCAGCTCGTGTTCCTAATCCAAATCCAAACATGGCCATGTCGCTATACCCATCGCCTGATCTTAACAGTGATATTAAATTGAAGTGGGACAAACCCGCATGTGGGGAATGTGTTGCTCGTGGCCAAGTTTGTGGGTTCACTGGGGACACAAGTCTTAAAGTCGGATGCTTCTCCACCTCTAACGATAGCAAAGGTTTGCCAAGAAGTGCCAAATATGGCTTAATTATAGGAGTGGGAATACCTGGAGTTTTATGTATAATTGGGCTTTGCTGTTTTCTCTGTGGAAAGTTCACGGTACATGCTCACCAGACCCGGCCCAGCTTAGAGCTTCCTGCCTCTATTATTACCCTACAAACTCCCTCGTTCATAATGGGCCTTGAAGGGCCGGAAATTGAAAAATATCCCAAGACTCTTCTTGGTGAAAGTGGACGCTTACCCAACTCGAATGATAACACGTGTCCAATATGCTTGTCTGAATACGAGCCCAAAGAGACGTTGAGGACCATACCTGCGTGCAACCATTATTTTCATGCACATTGCATAGATGTGTGGCTCAAGATGAATGCCACGTGCCCCTTGTGCAGGAATCCACCGGATGCATCCTCTACTATTACCCCTTCTTCTTCTTCTTTGTCTAGTACTAGTATCTATTCGTGA 1104 0.4538 MSCGEIDIHFPFGLKGANQSRECSYPRFQLSCNNHSQTILTVSGSGDFVVKSINYEEQTIQVNDPDGCLPKRFLQNLSFSVSSPFMFDASIYNFYDLIFLRCPSNITEPLPPISCLSDPSSLNSSSVIFIFSWWLPSDSSPLHECEVISSARVPNPNPNMAMSLYPSPDLNSDIKLKWDKPACGECVARGQVCGFTGDTSLKVGCFSTSNDSKGLPRSAKYGLIIGVGIPGVLCIIGLCCFLCGKFTVHAHQTRPSLELPASIITLQTPSFIMGLEGPEIEKYPKTLLGESGRLPNSNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDVWLKMNATCPLCRNPPDASSTITPSSSSLSSTSIYS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02259 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 348 IPR013083 -
Rops1g02259 367 Pfam Ring finger domain 300 344 IPR001841 -
Rops1g02259 367 Pfam Wall-associated receptor kinase galacturonan-binding 2 64 IPR025287 GO:0030247
Rops1g02259 367 SUPERFAMILY RING/U-box 296 349 - -
Rops1g02259 367 CDD RING-H2_EL5-like 302 344 - -
Rops1g02259 367 MobiDBLite consensus disorder prediction 348 367 - -
Rops1g02259 367 ProSiteProfiles Zinc finger RING-type profile. 302 344 IPR001841 -
Rops1g02259 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 347 IPR046948 -
Rops1g02259 367 SMART ring_2 302 343 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02259 Rops-Chr1 44697111 44698804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02259 2 347 C3H Transcription Factor Family AT2G46495 36.056 2.48e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02259 - - ahf:112732430 351.288