Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02258 ATGGCTACCTCATCGCACTTCTGTTTATTGTTCATCTTTCTTTTCCCTCTTAAAAGTACAAGAGGGGAAACAATTTGCGATAGCATGTCGTGCGGTGAAATTGATATTCAGTTCCCTTTCGGTTTGAAAGGAGCGAATCAAAGCCGTGAGTGTAGCTACCCCAGATTCCAGCTTTCTTGCAACAACTATAGCCAGACCATTCTTACCCTCTCAGGTTCAGGGGATTTTGTTGTCAAAAGTATCAATTACGAGGAACAAACCATTCAGGTAAACGACCCAGATGGGTGCCTCCCAAAACGTTTCTTGCAGAACTTGAGCTTTTCTGTCTCCTCCCCATTCATGTTTGACGCTAGCGTTTATGACTTTTATGACCTCACCTTCCTTCGATGCCCCTCCAACCTAACTGAGCCATATCCACTGCTACCAATTTCTTGCCTGAGTGATCCCAGCAGCCTCAACTCTTCATCGGTCATATTCATATTTTCACGGGGGCTACCTAGTGACTCATCACCCTTGCACGAGTGTGAGGTGATATCCTCAGCTCGTGTTCCTATTCCAAATCCAAACATGGCCATGTCACCATATTCAATGCTTGATCTTAACAGTGATATTGAATTGAACTGGAACAAACCCGCATGTGGGGATTGTGTTGCTCGTGGCCAAGTTTGTGGGTTGACTAGGGACACAAGTCTTAAAGTTGGATGCTTCTCCACCTCTAACAATAGCAAAGGTTTGTCAAGAAGTGCCAAATATGGCTTAATTATAGGAGTGGGAATACCTGGACTTTTATGTATAATTGGGCTTTGGTCTTATCTCTGTGGAAAGTTCACGGTACATGCTCAACGCCACCAGACCCGGCCCAGTATGGAGTTTCCTGCCTCGATTATTACCCTACAAACTCCCTCTTTCATAATGGGCCTTCATGGGCTAGAAATTGAAAAATATCCCAAGACTCTTCTTGGTGAAAGTGGACGCTTACCCAACTCGAATGATAACATATGTCCAATATGTTTGTCTGAATATGAGCCCAAAGAGACGTTGAGAACCATACCTGCGTGCAACCATTATTTTCATGCACATTGCATAGATGAGTGGCTCAAGGTGAGTGCCACATGCCCCTTGTGTAGGAATTCACCGAATGCATCCTCTACTATTACCCCTTCTTCTTCTATGTCTATCCATTCATCACATTCCTCTTCATCATAG 1206 0.442 MATSSHFCLLFIFLFPLKSTRGETICDSMSCGEIDIQFPFGLKGANQSRECSYPRFQLSCNNYSQTILTLSGSGDFVVKSINYEEQTIQVNDPDGCLPKRFLQNLSFSVSSPFMFDASVYDFYDLTFLRCPSNLTEPYPLLPISCLSDPSSLNSSSVIFIFSRGLPSDSSPLHECEVISSARVPIPNPNMAMSPYSMLDLNSDIELNWNKPACGDCVARGQVCGLTRDTSLKVGCFSTSNNSKGLSRSAKYGLIIGVGIPGLLCIIGLWSYLCGKFTVHAQRHQTRPSMEFPASIITLQTPSFIMGLHGLEIEKYPKTLLGESGRLPNSNDNICPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKVSATCPLCRNSPNASSTITPSSSMSIHSSHSSSS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02258 401 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Rops1g02258 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 381 IPR013083 -
Rops1g02258 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 379 IPR046948 -
Rops1g02258 401 SMART ring_2 334 375 IPR001841 -
Rops1g02258 401 Pfam Wall-associated receptor kinase galacturonan-binding 26 92 IPR025287 GO:0030247
Rops1g02258 401 Pfam Ring finger domain 333 376 IPR001841 -
Rops1g02258 401 MobiDBLite consensus disorder prediction 380 401 - -
Rops1g02258 401 SUPERFAMILY RING/U-box 328 394 - -
Rops1g02258 401 CDD RING-H2_EL5-like 333 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02258 Rops-Chr1 44684087 44685779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02258 26 380 C3H Transcription Factor Family AT2G46495 35.833 8.65e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02258 - - ahf:112732430 372.474