Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02249 ATGGAAAGTGACATGAGTTGGGAGCAGAATGCAGTCATCAATGAGCTAATTCAAGGGATGGAGATAGCAAGAAAGTTGAAAGCAGACTTGAGGTTACCCACTTCAGTTGACACAAGGAACTTGCTGGTGCAGAGGATATTATCCTCTTATGACAAAGCTTTACTAATCCTAAGATGGAATGAATCAATTCCCGAGTCACAGATCATGCAACAAGAACATAAAACTTGGTCACCATTATCCATCAACAGAAGTCCTCCGAGAGAGGAGGTTCAAGGTGGCCTCAAGGACCATCAGAAGCTTAAACCCAATTCAAAGAAAAGAAAGATAGTTCCCAAATGGATGGATCAGGTTAGAGTCAAGGTCGAGAATGGCTTTGAAGGACCCCATGAAGATGGTTACAAGTGGAGAAAATATGGACAGAAAGACATCCTCAGTGCAAAATATCCCAGATGCTATTATAGGTGCACCTACCGCAACAGTAAGGGCTGCTGGGCCACGAAGCAAGTGCAGAGATCCGATGAAGATCCAACTATGTTGGACATAACTTACCGAGGAAAACATACCTGTTCTCAAGGAAACAATGCTGTTCCGCCGCCAAAGTCACCAGACATACAAGAGAAACCACATGGTTATAATACTGAAAGCCTTACAAAGTTCAGAAACATGTTGACTGTCAATACTGAAAACCTGGGAAATGAAGAAAAGGCATTTCCTTTCCCTTCCCCTTCCACTTCATTTGGATGCATGACACAAGATAACAATACCTTATTTCTTTCTGTCCTGGAGAATGATCCCTTCTTGTTATCTCAAGAATCAAAAAGTTTTCAATCTCAGGCTTTCCTCTTTGATGAGTTGGATGGGGTCTGTACCAAGCCTTGCCCACTTTCTGATATTACCGAGATCATTTCCGCCAACACATTGGCCACCGATTTTCCAATTCTGGATTTCAATTTCTACCTGGATGCTGTGAAAATTGATTGA 981 0.422 MESDMSWEQNAVINELIQGMEIARKLKADLRLPTSVDTRNLLVQRILSSYDKALLILRWNESIPESQIMQQEHKTWSPLSINRSPPREEVQGGLKDHQKLKPNSKKRKIVPKWMDQVRVKVENGFEGPHEDGYKWRKYGQKDILSAKYPRCYYRCTYRNSKGCWATKQVQRSDEDPTMLDITYRGKHTCSQGNNAVPPPKSPDIQEKPHGYNTESLTKFRNMLTVNTENLGNEEKAFPFPSPSTSFGCMTQDNNTLFLSVLENDPFLLSQESKSFQSQAFLFDELDGVCTKPCPLSDITEIISANTLATDFPILDFNFYLDAVKID* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02249 326 FunFam WRKY transcription factor 53 115 192 - -
Rops1g02249 326 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops1g02249 326 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g02249 326 ProSiteProfiles WRKY domain profile. 130 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g02249 326 SUPERFAMILY WRKY DNA-binding domain 128 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops1g02249 326 MobiDBLite consensus disorder prediction 75 103 - -
Rops1g02249 326 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 255 IPR044810 GO:0003700
Rops1g02249 326 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02249 Rops-Chr1 44442874 44444384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02249 5 321 WRKY Transcription Factor Family AT4G11070 37.224 4.97e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops1g02249 WRKY 4.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02249 - - gmx:100815760 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02249 1 44442874 44444384 Rops1g02249 1 44442874 44444384 ECH
Rops1g02249 1 44442874 44444384 Rops4g01612 4 39429490 39432104 ECH
Rops1g02249 1 44442874 44444384 Rops2g00470 2 6724760 6726584 PCT