Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02237 ATGTTTAAGAAGCACTACACTCACCACCACCTCAACCACACCAAAGAAGACCCACCCAAACATCCATTTCCGAGAGTGGTGAGAATAACTGTCACAGACACCGACGCCACCGACTCATCCAGCGACGAAGGAGAAGACTTCTCATCTTCCACGCGCCATAGACACAGAAAGTTCATCAACGAGATTGTCATTGAGCCAAACACAAGCGAGAACGATGGTGTCGTTTCGAGGAAGAGAAGCAGGACCATCAAGTCCAACACCGTCGGAAAAGCCAGAGTTCCGGTAAGTCGGGTTTTTCCCTCCGGGAAGAAATTCCGGGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCTGAGATAAGAGACCCTTCACGAAAGACACGTCTTTGGTTAGGTACCTTCAATACTGCTGAGGAAGCTGCCATGGTGTACGACAACGCGGCTATAAAGCTGCGTGGACCCGACGCGCTCACTAATTTCATAACACCACCTGCCACGTGGCATTCCTTGCCGGAGAATGAAAAACCTCCGACTCCGAACTGCGGTTATAATTCCGGGGAAGAATCTCAGAACAGGAATTTGTTTTCTCCTAAGTCAGTGCTTCAGTGTTGTTCTTCATCCGAGGAAGTGGAATCTGTTACTGGAAAGGACGATGAATGCTCTTGCGTGTCGGAGAATTTCTGTGAGAAGATCCCAACGGAAAAGGCCGAATCTGAGTTACTGTTTTCTTCAATTCCAAACGATGTTTTATTTGACTTCCAAGGTTCTTCGGATGTGTTTGAAAACTTCAATAACGTGCCAGAAAGCATCTTCTTCGGTGATCTGTTCCTCACTTCTTTTGAGGATTTAGATTTCGGTTTCAAAAGTTGGCATACGAATAGGGATCGTGACTTTTTCCAAGATATTGACGATTTCTTTGTTTCAGATCCGCTTCTTGCTCTTTGA 945 0.4667 MFKKHYTHHHLNHTKEDPPKHPFPRVVRITVTDTDATDSSSDEGEDFSSSTRHRHRKFINEIVIEPNTSENDGVVSRKRSRTIKSNTVGKARVPVSRVFPSGKKFRGVRQRPWGKWAAEIRDPSRKTRLWLGTFNTAEEAAMVYDNAAIKLRGPDALTNFITPPATWHSLPENEKPPTPNCGYNSGEESQNRNLFSPKSVLQCCSSSEEVESVTGKDDECSCVSENFCEKIPTEKAESELLFSSIPNDVLFDFQGSSDVFENFNNVPESIFFGDLFLTSFEDLDFGFKSWHTNRDRDFFQDIDDFFVSDPLLAL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02237 314 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Rops1g02237 314 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Rops1g02237 314 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Rops1g02237 314 MobiDBLite consensus disorder prediction 1 52 - -
Rops1g02237 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 225 - -
Rops1g02237 314 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Rops1g02237 314 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Rops1g02237 314 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Rops1g02237 314 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Rops1g02237 314 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Rops1g02237 314 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02237 Rops-Chr1 44304446 44305862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02237 25 314 AP2-EREBP Transcription Factor Family AT4G23750 41.411 1.02e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g02237 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02237 - - vra:106777252 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02237 1 44304446 44305862 Rops1g02237 1 44304446 44305862 ECH
Rops1g02237 1 44304446 44305862 Rops2g00481 2 6883346 6884287 PCT