Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02236 ATGGAATATTTTCCACGCATTTTGTATTCCATTTACCTTGTGAGTTTGATGTTCTGGCAAGGAAATGCAGATTTGGTTGAAGACAAAAGAGCTTTACTTGATTTTGTTCAAAAGTTCCCTCCTTCTCGGCCTCTGAATTGGAATGAGAGTTCTTCACCGTGTTTCAGTTGGACTGGAGTGACTTGCAATGAAAATAAGTCCCAAGTTGTAGCCATCAGATTGCCAGGGTTTGGATTTCATGGCACCATTCCTCCTGATACTATAAGCCGTGTCAAGGGGCTGCAAACATTGAGCCTCAGATCCAACTTTATAAGTGGTCATTTTCCTTCTGATTTTTCCAATCTCAAGAACCTTTCTTTACTATCTCTTCAATTCAACAATTTGACAGGTCCTTTGCCGGATTTCTCTGCTTGGAAGAATCTATCTGTTGTTAATTTGTCCAATAACCGTTTCAGTGGCAGCATTCCTTTCTCACTTTCCAATTTGACTGAGCTTGCTGGTTTGAATCTTGCAAACAACTCGCTCTCTGGTGAAATCCCTGATCTCAAGTTGCCAAGGTTGCTGCAACTGAATTTGTCTAACAACAATTTGCAAGGGGGTGTGCCTGTGTCCCTCCGGAGATTTCCTAAGTCAGCATTCTTTGGAAACAGCATTTTTCTTGGAAGCTCTCCTTTCTTTTCTCCTGTAACTCTACCCTCTTCTGAACCATTTCCTAAATCTGAGAAACATGGAAGGCTTGGTGGAACTGCAGAGTTGGCAATTATTGTTGCTGGTGCTTTACTTGGCCTTACAGCATTCCTTGTTTTTATCTTTGCATGCTGCTCTAGAAAGAAGGATGGAGATGCCTTCAGTGGCAAGTTGCAGAAGGGAGAAATGTCTCCTGAAAAAGTGGTCTCAAGGGACCAGGATGCAAATAATAAACTTGTTTTCTTTGAGGGATGTAATTATGCATTTGACCTGGAGGATTTATTAAGGGCTTCTGCTGAGGTACTTGGTAAGGGAACATTTGGGGCTGCATACAAGGCCATACTAGAGGATGCAGCCACAGTTGTTGTGAAGAGATTGAAGGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAACACATGGATATTGTTGGAAGTCTTAAACACGAGAATGTGGTTGAGCTAAAGGCATATTACTATTCCAAAGATGAGAAACTGATGGTATATGACTACTACAGTCAGGGGAGCCTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGATACTCGGATCAAAATAGCTTTAGGTGCTGCACGAGGCCTTGCTCATATCCATTCTGAGAATGGTGGGAAACTTGTACATGGCAATGTAAGATCCTCAAATATCTTTCTCAATACTAAGCAGTATGGTTGTGTATCTGATCTTGGCCTGGCAACCATAATGAGCTCAGTTGCCCTACCTGTCGCCCGATCTGCTGGTTACCGAGCACCTGAAGTTACAGACACCAGGAAAGCAACACAATCTTCAGATGTTTACAGCTTTGGTGTGGTGTTACTAGAGCTTTTGACAGGGAAATCCCCTATCCACACAACTAGAGGTGATGAGATTGTCCACCTAGTGAGATGGGTTCATTCAGTTGTGAGAGAGGAGTGGACAGCTGAAGTATTTGACTTAGAGCTGATGAGACATCCTAATATAGAGGAAGAGATGGTAGAGATGTTACAGATAGCACTGTCATGTGTGGTAAGGGTGCCTGATCAGAGACCAAAGATGTCAGAAATAGTAAAGACGATAGAAAATGTGAGGCAGATTGATACAGAGAATCAGCCATCATCTGAGAATCAGAAGATATTACAAAGTTGGGTTCCCATGTTTCTAATGGGATTTGGTTTAGCTAGCAAGGAAAAAACTTGGTTTGTAAGAAATGATGGCTATTCTCAAGAATTTCCCCTACTCGAAACCCCACCTATCACCATCAACAAGCTCAAAACCACCGACAGACTCACAAAGCTTGGAAATTTCTCCGATGCAAACTCCGAAGCTACCACAAAGCCCTCAAACCTGACAATCGGGGTCAGGTTTGGCACAAAACATGTTCCACGAACTTGTCCGCTTCCACCACGTGTATTGTCGAATCTGCCTGAACGGTTCAACACGGAACATCATCGGAGGTCTCAAACTATTGTCCAAGGCTCTCTCGGAAAACCCAAACGGCCCCCTTGGGCAAAACAGGTCCTCGAAATTGAGTGGGGTGGTGCTCTGGTGGAGGCGGTGGGGGTGATGGAGGCGATGCTAGTGGGGTGGTGGAGGCGATGGGGTGGTTGA 2310 0.4407 MEYFPRILYSIYLVSLMFWQGNADLVEDKRALLDFVQKFPPSRPLNWNESSSPCFSWTGVTCNENKSQVVAIRLPGFGFHGTIPPDTISRVKGLQTLSLRSNFISGHFPSDFSNLKNLSLLSLQFNNLTGPLPDFSAWKNLSVVNLSNNRFSGSIPFSLSNLTELAGLNLANNSLSGEIPDLKLPRLLQLNLSNNNLQGGVPVSLRRFPKSAFFGNSIFLGSSPFFSPVTLPSSEPFPKSEKHGRLGGTAELAIIVAGALLGLTAFLVFIFACCSRKKDGDAFSGKLQKGEMSPEKVVSRDQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGAAYKAILEDAATVVVKRLKEVAVGKKDFEQHMDIVGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSLSALLHGKRGEDRVPLDWDTRIKIALGAARGLAHIHSENGGKLVHGNVRSSNIFLNTKQYGCVSDLGLATIMSSVALPVARSAGYRAPEVTDTRKATQSSDVYSFGVVLLELLTGKSPIHTTRGDEIVHLVRWVHSVVREEWTAEVFDLELMRHPNIEEEMVEMLQIALSCVVRVPDQRPKMSEIVKTIENVRQIDTENQPSSENQKILQSWVPMFLMGFGLASKEKTWFVRNDGYSQEFPLLETPPITINKLKTTDRLTKLGNFSDANSEATTKPSNLTIGVRFGTKHVPRTCPLPPRVLSNLPERFNTEHHRRSQTIVQGSLGKPKRPPWAKQVLEIEWGGALVEAVGVMEAMLVGWWRRWGG* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02236 769 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 608 - -
Rops1g02236 769 Gene3D Phosphorylase Kinase; domain 1 289 399 - -
Rops1g02236 769 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02236 769 PANTHER OS05G0588300 PROTEIN 6 607 - -
Rops1g02236 769 SUPERFAMILY Protein kinase-like (PK-like) 329 606 IPR011009 -
Rops1g02236 769 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Rops1g02236 769 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Rops1g02236 769 Gene3D Transferase(Phosphotransferase) domain 1 400 617 - -
Rops1g02236 769 FunFam pollen receptor-like kinase 1 294 399 - -
Rops1g02236 769 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Rops1g02236 769 Gene3D Ribonuclease Inhibitor 138 224 IPR032675 -
Rops1g02236 769 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
Rops1g02236 769 SUPERFAMILY L domain-like 38 207 - -
Rops1g02236 769 Pfam Protein kinase domain 328 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02236 Rops-Chr1 44252318 44258607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02236 17 608 Receptor kinase-like Gene Family AT4G23740 62.189 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops1g02236 Pkinase 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02236 - - gmx:100814524 932.939