Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02225 ATGGGTAACTGTAGCAGCGATCCCTCTTCCCAAACCCAATCGAATTCTGACCCCACACCCTCCAATGCCATTGGCATCTCCGTCCTCCCTCCCGATCGGAACCCCAAACCACACTCAACAGCCGCAGCCCCTTCAGTGGGCCGCGTATTGGGCCGGCCCATGGAGGACGTTCGGTCCACCTACATCTTCGGCCGCGAACTGGGCCGTGGCCAGTTCGGGGTGACATATCTGGTGACTCACAAAGTCACCAAGGAGCAGTTTGCTTGCAAATCCATCGCAACACGGAAGCTCCTTCACCGTGATGACTTGGATGACATTCGCCGTGAGGTTCAGATCATGCACCACCTCACCGGTCACCGGAACATCGTGGAGCTCAAGGGTGCTTATGAGGATCGCCACTCTGTTAACCTCATCATGGAGCTCTGTGCCGGCGGTGAACTCTTCGATAGGATCATAAGCAAGGGACATTACTCCGAACGTGCCGCCGCTAACTTGTGTCGCCAGATCGTGACTGTGGTTCACAATTGTCACTCCATGGGAGTGATGCACAGGGATTTGAAGCCAGAGAATTTCTTGTTCCTTGGCAAGGATGAGAATTCGCCTCTTAAGGCCACGGATTTTGGTCTCTCTGTGTTTTTCAAGCCGGGAGATGTGTTTAAGGATCTTGTTGGGAGTGCTTATTATGTTGCTCCTGAGGTTCTGCGTAGAAGTTATGGACCCGAAACTGATATTTGGAGTGCTGGGGTTATATTGTACATTCTGCTCTCTGGTGTCCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCATCAGATCCTTGGCCTTCCATTTCTAGTAGTGCCAAAGATCTGGTCAAGAAGATGTTACGAGCTGACCCTAAAGAAAGGCTTTCGGCAGTTGAAGTCCTTAATCATCCTTGGATGAAAGAAGATGGAGCATCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTTCCCAAACTGGGTACTAAGATTTCTGAGTCTGAAGCAAGGCAATTGATGGAAGCGGCTGATGTAGACGGAAATGGAGCCATTGATTATATTGAGTTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAGGCCTTTGAATATTTTGACAAGGATAAAAGCGGGTATATCACAAAGGAAGAGTTGGAATCTGCCCTTAAAAATTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATACAGACAATGATGGAAGGATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACTTGATCACCAACAGACGTCGCAAATAA 1536 0.4622 MGNCSSDPSSQTQSNSDPTPSNAIGISVLPPDRNPKPHSTAAAPSVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLLHRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAANLCRQIVTVVHNCHSMGVMHRDLKPENFLFLGKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPETDIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEARQLMEAADVDGNGAIDYIEFITATMHMNRMEREDHLYKAFEYFDKDKSGYITKEELESALKNYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDLITNRRRK* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02225 511 ProSiteProfiles EF-hand calcium-binding domain profile. 469 503 IPR002048 GO:0005509
Rops1g02225 511 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Rops1g02225 511 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Rops1g02225 511 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02225 511 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g02225 511 Pfam EF-hand domain pair 436 498 IPR002048 GO:0005509
Rops1g02225 511 Pfam EF-hand domain pair 366 426 IPR002048 GO:0005509
Rops1g02225 511 FunFam Calcium-dependent protein kinase 1 326 501 - -
Rops1g02225 511 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
Rops1g02225 511 FunFam Calcium-dependent protein kinase 1 63 146 - -
Rops1g02225 511 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02225 511 Pfam Protein kinase domain 63 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g02225 511 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Rops1g02225 511 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Rops1g02225 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Rops1g02225 511 SUPERFAMILY EF-hand 357 498 IPR011992 -
Rops1g02225 511 SMART efh_1 472 500 IPR002048 GO:0005509
Rops1g02225 511 SMART efh_1 365 393 IPR002048 GO:0005509
Rops1g02225 511 SMART efh_1 437 465 IPR002048 GO:0005509
Rops1g02225 511 SMART efh_1 401 429 IPR002048 GO:0005509
Rops1g02225 511 MobiDBLite consensus disorder prediction 1 44 - -
Rops1g02225 511 Gene3D - 327 501 - -
Rops1g02225 511 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Rops1g02225 511 FunFam calcium-dependent protein kinase 1 147 326 - -
Rops1g02225 511 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Rops1g02225 511 CDD STKc_CAMK 61 318 - -
Rops1g02225 511 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Rops1g02225 511 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Rops1g02225 511 PANTHER SERINE/THREONINE-PROTEIN KINASE 58 493 - -
Rops1g02225 511 Gene3D Transferase(Phosphotransferase) domain 1 147 326 - -
Rops1g02225 511 SUPERFAMILY Protein kinase-like (PK-like) 58 327 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02225 Rops-Chr1 44122912 44127344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02225 47 510 EF-hand Containing Proteins AT4G23650 81.935 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops1g02225 Pkinase 9.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02225 K13412 - gmx:100817321 907.901