Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02223 ATGTTGATGTCAGCGCTTGGTGTTGGGGTGGGAGTGGGAGTGGGAGTGGGGATTGGCTTGGCTTCTGGAAAAAACGTTAGCCAATGGGGAGGTTATAATTCTTCCTCAAGCGCCATTACTCCACAGAAATTGGAGCACGAAATGCAAAGACTAGTTGTTGATGGCAGAGAAAGCAATGTCACTTTTGATCAATTCCCTTATCATCTCAGTGAGTTGACACGGGTGTTGCTGACAAGTGCTGCCTATGTCCACTTAAAGCATGACGAGGTTTCTCAATATACACAGAATCTTGCTCCTGCAAGCCGGACTATTCTGCTCTCTGGGCCAGCAGAACTTTACCAACAGGTGCTTGCCAAGGCTTTAGCTCAATACTTTGAGGCAAAGTTGCTTCTCTTAGATGTAACTGACTTTTCATTGAAGATTCAGAGTAGATATGGTTCTGCCAACAAAGAATCTTCTTTCAAAAGGTCTCCTTCAGAGTCAACATTGGAGCGGTTATCTGACCTATTTGGGTCATTTTCAATCTTTCCACAGAGGGAAGAGCATAAAGTTGCAGGCATAATCCACAGGCAAAGCAGTGGGGTGGACCTCCGATCAATGGAGGCTGAAGGATCTTGTGATCTACCTAAGCTTCGTCGGAATGCATCTGCCTCTGCAAATATTAGTAGCCTTGGTTTGCAAAATAATCCTACAAATTCAGCTCCTTTGAAACACATAACCAGTTGGGCTTTTGATGAAAAGCTTCTTATACAGACTATTTACAAGGTTCTAGTTTCTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGTTGATAAGTTTTTATATAGATCACAAAGGATGTATAAACTATTCCAGAAAATGTTGAATAAATTATCTGGACCAATTGTGATTCTTGGTTCACGAGTTCTGGGGTCTGGCAATGACTGCAAAGAAGTGAATGAGAAGCTTTCTTTCCTCTTCCCCTACAACATAGAAATCAAGCTACCTGAAGACGAATCTCATCTTGTCAGCGGGAAGTCTCAATTTGAAGAGGATATGAAGAGGATACAGATTCATGATAACAGGAACCATATCATGGAAGTGCTTACAGCCAACGATCTTGATTGTGATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTGTCGTGTCAGCAATTTCTTATCATTTAATGAATAACAAAGATCCTGAGTACAGAAATGGGAAATTGGTCATTCCAAGCAATAGTTTGTCCCATGCATTGGGCATATTCCAGGAGGGGAAATTCAATGCAAGAGATAAATTAAAATTACAAGGAGCTCGGACAATAACATCTGAGCGGAGAGAGGAAGGAGCTGTTACGAAACCAGATGTAAAGTCTGAAAATCCTGCTTCTGATGTAAAGGCTGGAGCAGAAACCCCAATTTCAGTGGGAAGAACTGACGGTGAAAATTCAGTTCCTGCATCCAAAGCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAGATTGGTGTAACATTCTCTGATATTGGTGCCTTAGATGAAACCAAAGAGTCGCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCAGACCTTTTCAGTGGAGGCCTTCTAAAACCTTGTAAAGGAATATTGCTATTTGGGCCTCCAGGCACCGGAAAGACAATGCTGGCAAAGGCCATTGCAAATGAGGCTGGAGCAAGTTTCATTAATGCATCCATGTCTGTCATCACCTCCAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTGGCAGCCAAGGTCTCCCCAACCATTATATTTGTTGATGAGGTTGATAGTATGCTTGGGCAGCGGACCAGAGTTGGGGAGCATGAAGCGATGCGGAAAATAAAGAATGAATTTATGACCCACTGGGATGGGCTTATGACAAAACCAGAGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTGGATGAAGCAATTATTAGACGATTTGAAAGGAGAATTATGGTAGGGCTACCATCTGTGGAGAACAGGGAAAAGATATTGAGGACTCTTTTGGCTAAAGAGAAGGTGGACAAGGAACTTGATTTTAAAGAACTCGCAACCATGACAGAAGGATATACAGGAAGTGATCTAAAGAACTTCTGCACAACTGCTGCTTATAGGCCTGTTAGAGAGTTAATTCAGCAAGAGAGACTAAAGAATTTGGAGAAAAAGCAGAAATATGCTGAAGGACAAAATAACAATGTCCAAGACGCACGAGGAAAACAATCTACAGTAGGAAATACCCAAGATGCTCAGGATGCTAAAGAGGAAGTTGAACAGGAAAGAGTTATTACCCTTAGGCCTTTGAACATGCAGGACTTCAAAGAGGCAAAGAATCAGGTTGCTGCAAGCTTCGCAGCTGAGGGGGCTGGAATGAATGAGTTGAAACAGTGGAATGACTTGTATGGGGAAGGCGGTTCAAGGAAGCAACAACAACAGCAATTATCTTACTTCCTATGA 2562 0.4251 MLMSALGVGVGVGVGVGIGLASGKNVSQWGGYNSSSSAITPQKLEHEMQRLVVDGRESNVTFDQFPYHLSELTRVLLTSAAYVHLKHDEVSQYTQNLAPASRTILLSGPAELYQQVLAKALAQYFEAKLLLLDVTDFSLKIQSRYGSANKESSFKRSPSESTLERLSDLFGSFSIFPQREEHKVAGIIHRQSSGVDLRSMEAEGSCDLPKLRRNASASANISSLGLQNNPTNSAPLKHITSWAFDEKLLIQTIYKVLVSVSKTYPIVLYLRDVDKFLYRSQRMYKLFQKMLNKLSGPIVILGSRVLGSGNDCKEVNEKLSFLFPYNIEIKLPEDESHLVSGKSQFEEDMKRIQIHDNRNHIMEVLTANDLDCDDLDSICVADTMVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLVIPSNSLSHALGIFQEGKFNARDKLKLQGARTITSERREEGAVTKPDVKSENPASDVKAGAETPISVGRTDGENSVPASKAEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALDETKESLQELVMLPLRRPDLFSGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINASMSVITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTKPEERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDKELDFKELATMTEGYTGSDLKNFCTTAAYRPVRELIQQERLKNLEKKQKYAEGQNNNVQDARGKQSTVGNTQDAQDAKEEVEQERVITLRPLNMQDFKEAKNQVAASFAAEGAGMNELKQWNDLYGEGGSRKQQQQQLSYFL* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02223 853 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 519 694 - -
Rops1g02223 853 Gene3D - 692 772 - -
Rops1g02223 853 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 852 - -
Rops1g02223 853 MobiDBLite consensus disorder prediction 451 501 - -
Rops1g02223 853 Pfam AAA+ lid domain 714 756 IPR041569 -
Rops1g02223 853 Coils Coil 752 772 - -
Rops1g02223 853 SMART AAA_5 556 693 IPR003593 GO:0016887
Rops1g02223 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 759 IPR027417 -
Rops1g02223 853 Gene3D - 519 691 IPR027417 -
Rops1g02223 853 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524|GO:0016887
Rops1g02223 853 MobiDBLite consensus disorder prediction 761 791 - -
Rops1g02223 853 MobiDBLite consensus disorder prediction 761 785 - -
Rops1g02223 853 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02223 Rops-Chr1 44104410 44110253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02223 520 752 Calmodulin-binding Proteins AT3G56690 37.712 1.44e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02223 - - gmx:100808011 1321.61