Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02214 ATGGCTGGGGAGGTAGAGAAGAAAGCCAAAGAAGCATTCTTTGATGACGATTTCGCTCTCGCCGTTGATCTCTACACTGAAGCCATCAACTTGGATCCCAATAACGCCGACCTCTTCGCCGATAGAGCGCAAGCCCATATTAAGCTCAACGCTTTCACTGAAGCTGTTTCGGATGCAAATAAAGCTATTCAATTAAACCCATCTTTGTCAAAGGCATATCTTCGAAAAGGGACTGCTTGTATTAAGCTTGAGGAATATCATACTGCTAAGGTAGCACTACAAAACGGTGCCGCTTTTGCACCAGATGATTCTAGATTCACCAAGTTGATTCAAGAATGTGATCGCCGTATTGCAGAGGAATCGAGTGGTCTTTCTAGCACCGTATCACCAAATGGATCCGTAAAATCTGTACTGTCTGGTGTTGATTCCCATTCGCCTGATAGAAGTGATGGAACAGCTAAGGAAGCTGAAAGAGAAAGTTCTGTATCCCAAATCAATGAAGTTGCACCAATCAGACCAAAATACAGACATGAGTACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGCATACCAGAAAAAGATGTGGTCGTTGACTTTGGGGAACAAATTCTGAGTGTCACTATTGATGTTCCTGGCCAAGATGCCTATCATTTTCAACCTCGATTGTTTGGAAAGATAATACCTGAGAAGTGCAGAGTTGTGGTATTGTCAACCAAAATTGAAATACGTCTTGCAAAAGCTGAAGCTAATAATTGGACATCTCTGGAATATAGCAAGGATGTGCTTCCACAAAAAATAAAAATGCCTACAATTCAATCTGAAAGACCTGCATACCCATCATCGAAGTCAAGGACAAAAGATTGGGATAAGTTGGAAGCCGAAGTGAAAAAAGAGGAGAAAGAAGAAAAACTCGATGGTGACGCTGCTTTGAATAAATTGTTCCGTGATATTTACCATAATGCAGATGAGGACATGCGGAGAGCAATGAGCAAGTCTTTTCTTGAGTCAAATGGAACAGTGTTGTCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGTATGGAGTTGAAGAAATGGGAGTATTGA 1122 0.4171 MAGEVEKKAKEAFFDDDFALAVDLYTEAINLDPNNADLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACIKLEEYHTAKVALQNGAAFAPDDSRFTKLIQECDRRIAEESSGLSSTVSPNGSVKSVLSGVDSHSPDRSDGTAKEAERESSVSQINEVAPIRPKYRHEYYQKPEEVVVTIFAKGIPEKDVVVDFGEQILSVTIDVPGQDAYHFQPRLFGKIIPEKCRVVVLSTKIEIRLAKAEANNWTSLEYSKDVLPQKIKMPTIQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYHNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02214 373 MobiDBLite consensus disorder prediction 353 373 - -
Rops1g02214 373 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Rops1g02214 373 Gene3D - 173 264 IPR008978 -
Rops1g02214 373 PANTHER PROTEIN SGT1 HOMOLOG 2 371 IPR044563 GO:0051087
Rops1g02214 373 SUPERFAMILY HSP20-like chaperones 169 267 IPR008978 -
Rops1g02214 373 FunFam Protein SGT1 homolog A 170 274 - -
Rops1g02214 373 MobiDBLite consensus disorder prediction 120 146 - -
Rops1g02214 373 Pfam SGS domain 291 371 IPR007699 -
Rops1g02214 373 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Rops1g02214 373 Pfam CS domain 176 251 IPR007052 -
Rops1g02214 373 ProSiteProfiles CS domain profile. 172 261 IPR007052 -
Rops1g02214 373 MobiDBLite consensus disorder prediction 147 161 - -
Rops1g02214 373 FunFam Protein SGT1 homolog 1 128 - -
Rops1g02214 373 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Rops1g02214 373 CDD p23_CS_SGT1_like 178 261 - -
Rops1g02214 373 ProSiteProfiles SGS domain profile. 282 373 IPR007699 -
Rops1g02214 373 SMART tpr_5 70 103 IPR019734 GO:0005515
Rops1g02214 373 SMART tpr_5 2 35 IPR019734 GO:0005515
Rops1g02214 373 SMART tpr_5 36 69 IPR019734 GO:0005515
Rops1g02214 373 MobiDBLite consensus disorder prediction 120 164 - -
Rops1g02214 373 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02214 Rops-Chr1 43842163 43846480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02214 1 96 U-box Gene Family AT3G07370 33.333 8.96e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02214 K12795 - gmx:100784022 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02214 1 43842163 43846480 Rops1g02214 1 43842163 43846480 ECH