Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02206 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATTACCACTCATGGCTATGGCTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCCGATATTAGAAGAGGCAGGTTTACACCTGAGGAAGAGAAGTTAATTATAAGCCTTCATGGGGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGAACTGACAATGAAATAAAAAACTATTGGAATTCTTGGATCAAGAAGAAAATACGAAAGCCTTCAGTAACTTCATCAATCACCACATCACAAAATGTTGATTATCATCCCCAGTTCAATTATAATTCCACTCAACTCGATCATTTTGCCAATCAAGAGAATATAACAGTAAAGCCACCGGTACAAGAACCCTTATTTTCTTCCACATGCCCTTTATTTATGTTTGACACTAGTTCACTAGATGGGACCACAGCAGACACCAATGCACGAGCAGAACTCTTTCCAGATACTGTGGGCTTGAGCTCTGAAACGTGGAACTTGAGCCACCATCAAGTTCAGGCCCTTCCTCCTCATCCAGCAACAACTTTTACAACAGCTTCAGTCATTGATACTAATAATTATCTGCCATCATTGATAGAGAACGTGGAAAACATGGTACCATTGGAAGTACAGTCTTGCAATATGGACGAGGAAGGAGAATTAACATTGGAGTGCTTGCAGAGGCAAGGGTTGAATGAGTGGGTGGAGACCCAACAACAATGTCCTAATTTTATTTTCTGGGACAGTGTTGATGATGGACAACTTGGAGGGGAAGAACTAGCACCAAACACATCAAATATGGGAACAGCTACACTTTCTCCTTTTCCTTCGTCTTTGTGA 954 0.4277 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTSQNVDYHPQFNYNSTQLDHFANQENITVKPPVQEPLFSSTCPLFMFDTSSLDGTTADTNARAELFPDTVGLSSETWNLSHHQVQALPPHPATTFTTASVIDTNNYLPSLIENVENMVPLEVQSCNMDEEGELTLECLQRQGLNEWVETQQQCPNFIFWDSVDDGQLGGEELAPNTSNMGTATLSPFPSSL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02206 317 FunFam MYB transcription factor 6 66 - -
Rops1g02206 317 CDD SANT 69 112 IPR001005 -
Rops1g02206 317 PANTHER MYB DOMAIN PROTEIN 55 1 219 - -
Rops1g02206 317 MobiDBLite consensus disorder prediction 297 317 - -
Rops1g02206 317 Gene3D - 6 66 - -
Rops1g02206 317 CDD SANT 17 61 IPR001005 -
Rops1g02206 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops1g02206 317 SMART sant 66 114 IPR001005 -
Rops1g02206 317 SMART sant 13 63 IPR001005 -
Rops1g02206 317 MobiDBLite consensus disorder prediction 293 317 - -
Rops1g02206 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops1g02206 317 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops1g02206 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops1g02206 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops1g02206 317 FunFam Transcription factor MYB26 68 137 - -
Rops1g02206 317 Gene3D - 68 137 - -
Rops1g02206 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops1g02206 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02206 Rops-Chr1 43737003 43739268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02206 1 289 MYB Transcription Factor Family AT1G63910 52.035 2.38e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g02206 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02206 K09422 K02947 gmx:100803556 565.459