Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02205 ATGATCATTTCGGAGAAGAACCGTCGTGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGATTTCAATCTGGCAAAGCACCCAGAGATCGATGTGCCGAATCTTCAGGTGATTAAGTTGATGCAGAGCTTCAAGTCAAGGGAATACGTGCGTGAGACCTTTGCTTGGATGCACTATTACTGGTTTCTCACCAACGATGGCATTGAGTTTCTGAGGACTTACCTCAATCTTCCCTCTGAAATTGTGCCAGCCACTCTGAAGAAACAAGCCAAGCCAGCTGGTAGACCATTCGGTGGACCACCCGGTGATCGCCCTAGGGGCCCACCTCGCTTTGATGGAGAGAGGAGATTTGGTGATCGTGATGGATACCGTGGAGGTCCCAGGGGACCTGGTGGTGACTTTGGAGACAAGGGTGGAGCTCCAGCTGACTACAGGCCTTCTTTCGGGGGTCCTGGCGGAAGGTCTGGTTTTGGCCGTGGTGCTGGTGGTTATGGAGCGCCTACAAGTTCAAATATTCCTTAA 537 0.5121 MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRSGFGRGAGGYGAPTSSNIP* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02205 178 MobiDBLite consensus disorder prediction 112 128 - -
Rops1g02205 178 Gene3D - 1 104 IPR036388 -
Rops1g02205 178 MobiDBLite consensus disorder prediction 91 178 - -
Rops1g02205 178 FunFam 40S ribosomal protein S10 1 104 - -
Rops1g02205 178 Pfam Plectin/S10 domain 3 94 IPR005326 -
Rops1g02205 178 PANTHER 40S RIBOSOMAL PROTEIN S10 1 172 IPR037447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02205 Rops-Chr1 43733405 43735693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02205 1 178 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 76.536 3.73e-79 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02205 K02947 K09422 gmx:100797787 223.787